Helicobacter pylori HUP-B14: HPB14_00430
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Entry
HPB14_00430 CDS
T02035
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
hcn
Helicobacter pylori HUP-B14
Pathway
hcn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hcn00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HPB14_00430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcn03021
]
HPB14_00430
Transcription machinery [BR:
hcn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HPB14_00430
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
MCR_beta_N
WYL_3
Sigma70_r4_2
HTH_25
SieB
Motif
Other DBs
NCBI-ProteinID:
AFI06806
LinkDB
All DBs
Position
complement(85954..87996)
Genome browser
AA seq
680 aa
AA seq
DB search
MKKKANEEKAPKRAKQEAKAEATQEVAQENKTKENNKAKESKIKENKTKESKIKEAKAKE
LVPVKKLSFNEALEELFANSLSDCVSYESIIQISTKVPTLAQVKKIKELCQKYQKKLVSS
SEYAKKLNAIDKIKNTEEKQKVLDEELEDGYDFLKEKDFLEWSRSDSPVRMYLREMGDIK
LLSKDEEIELSKQIRLGEDIILDAICSVPYLIDFIYAYKDALINRERRVKELFRSFDDDD
ENSVSDSKKDDDSEEDEENEERKKVVSEKDKKRVEKVQESFKALDKAKKEWLKALEAPID
EKEDELVRLLTLAYKRQTLKDRLYDLEPTSKLINELVKTMETTLKSGDGFEKELKRLEYK
LPLFNDTLIANHKKILANITNMTKEDIIAQVPEATMVSVYMDLKKLFLTKEASEEGFDLA
PNKLKEILEQIKRGKLISDRAKNKMAKSNLRLVVSIAKRFTSRGLPFLDLIQEGNIGLMK
AVDKFEHEKGFKFSTYATWWIKQAISRAIADQARTIRIPIHMIDTINRINKVMRKHIQET
GKEPDLEVVAEEVGLSLDKVKNVIKVTKEPISLETPVGNDDDGKFGDFVEDKNIVSSIDH
IMREDLKAQIESVLDQLNEREKAVIRMRFGLLDDESDRTLEEIGKELNVTRERVRQIESS
AIKKLRSPQYGRILRNYLRI
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagaaagctaacgaagaaaaagcccccaaaagagctaaacaggaagccaaagca
gaagccacacaagaagtcgcacaagaaaataaaactaaggaaaacaataaagccaaagag
agcaaaattaaagaaaataaaaccaaagagagcaaaatcaaagaagctaaagcgaaagaa
cttgttcctgttaaaaagcttagttttaatgaagcgttagaagaattgttcgctaattcc
ttaagcgattgcgtttcttatgagtctatcattcaaatcagcacgaaagtccccactcta
gcccaagtcaaaaaaatcaaagaattgtgccaaaaataccaaaagaaattggtcagctct
tcagaatacgctaaaaaactcaatgcgattgacaagattaaaaacaccgaagaaaagcaa
aaagttttagatgaagaattagaagatggctatgattttttgaaagaaaaggatttttta
gagtggagcaggagcgatagcccggtgcgcatgtatttgcgtgagatgggggatataaaa
cttttaagcaaagatgaagagattgaattgagcaagcaaatccgcttgggcgaagacatt
attttagacgcgatttgctcggtgccgtatttgattgattttatttatgcgtataaagat
gctttaatcaatcgtgaaagaagggttaaagagcttttcaggagctttgatgatgacgat
gaaaatagcgtgagcgattctaaaaaagatgacgacagcgaagaagatgaagaaaacgaa
gaaaggaaaaaagtcgtttctgaaaaagacaagaagcgcgtagaaaaggttcaagaaagc
tttaaagccctagacaaggctaaaaaagaatggcttaaagctcttgaagcccctatagat
gaaaaagaagatgaattggtgcgtttattgaccctagcttacaaacgccaaacgctcaaa
gacagactctatgatttagagcctaccagcaaactgattaatgaattagtcaaaacgatg
gaaaccactttaaaaagcggcgatgggtttgaaaaagagttgaaacgcttggaatacaaa
ttgcccttattcaatgacactctcatcgcaaaccataaaaaaatccttgctaatatcact
aacatgactaaagaagatattatcgctcaagtgccagaagcgaccatggtgagcgtgtat
atggatcttaaaaagctttttttgactaaagaagcgagtgaagaaggctttgatttagcc
cctaacaagctaaaagaaattttagagcaaatcaaaagagggaaattgatttccgatcgc
gctaaaaacaaaatggctaaatccaatttaaggttggtagtgagtatcgctaaacgattc
acaagtagaggcttacccttcttggatttgattcaagagggtaatatcggcttgatgaaa
gcggtggataagtttgaacatgaaaagggcttcaagttttctacctatgcgacctggtgg
atcaaacaagctatcagcagagccatagccgatcaagcccgcactatccgcatccccatt
cacatgattgacacgattaatcgcatcaataaagtcatgcgtaaacacattcaagaaacc
ggcaaagagcctgatttagaagtggtggctgaagaagtggggctttcgttagataaagtg
aagaatgtgattaaggtgactaaagagcctatcagtttggaaactccagtcggcaatgat
gatgacggcaaatttggggatttcgtggaagataaaaatatcgtcagctctatcgatcac
atcatgcgagaagatttaaaagcacaaattgaaagcgttttggatcagttgaatgagcga
gaaaaagcggtgatccgcatgcgttttgggcttttagacgatgaaagcgatcgaacttta
gaagaaatcggcaaggaattgaatgttacgagagaaagggtgcgccagattgaaagctct
gcgatcaaaaaattgagaagtccgcaatacgggcgcattttgagaaactatttgcgcatt
tga
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integrated database retrieval system
