Helicobacter pylori HUP-B14: HPB14_01220
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Entry
HPB14_01220 CDS
T02035
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hcn
Helicobacter pylori HUP-B14
Pathway
hcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPB14_01220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcn03019
]
HPB14_01220
03009 Ribosome biogenesis [BR:
hcn03009
]
HPB14_01220
Enzymes [BR:
hcn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HPB14_01220
Messenger RNA biogenesis [BR:
hcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HPB14_01220
Ribosome biogenesis [BR:
hcn03009
]
Prokaryotic type
rRNA helicases
HPB14_01220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
Cas3-like_C_2
UvrD-helicase
AAA_30
AAA_22
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AFI06955
UniProt:
A0AB32ZP89
LinkDB
All DBs
Position
245401..246879
Genome browser
AA seq
492 aa
AA seq
DB search
MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRASI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSEGIISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSNKKTHPHEPARSFKKGQHRDRHP
KTNHYSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatcaaccaccactccctacagaaattgatgatgacgcttatcataagccg
agttttaatgacttgggcttaaaagaatcggttttaaaatccgtttatgaagccggcttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcgcaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccaccagagaattagcc
atgcaaattagcgatgagatttttaaattgggcaaacataccaggactaaaaccgtgtgc
gtgtatggagggcagagcgttaaaaaacaatgcgaatttattaagaaaaacccccaagtg
atgatcgctacaccaggaagattgttggatcatttaaaaaacgaacgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcacagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacaccgacatcacccaacgcttttatgtgatcaat
gagcatgagagggccgaagcgatcatgcgccttttagacacccaagcgcccaaaaaaagc
atcgttttcacgcgcactaaaaaagaagccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgccttgcatggggatatggatcaaagggatcggcgtgcttctatc
atggcgtttaaaaaaaatgatgctgatgtgttagtggctacagatgtagcgagccgtggg
ctagacattagcggtgtaagccatgtgtttaattaccatttgcccctaaataccgagagc
tatatccatcgcatcgggagaaccggaagagcgggcaaaaaaggcatggcgatcacttta
gtaacgcccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttgcatgacgct
aaagtgtctgaagggatcatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagcaaaatcggcttgaaccag
caagaaattgatgcgattcaaaaccctaaagagaaaacgccaaaaccctctaacaaaaaa
acgcacccgcatgagccagcgcgttctttcaaaaagggtcagcacagagacagacaccct
aaaacgaaccattattctaaaaaacccaaacgccgttaa
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