Helicobacter pylori HUP-B14: HPB14_03940
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Entry
HPB14_03940 CDS
T02035
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hcn
Helicobacter pylori HUP-B14
Pathway
hcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPB14_03940 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcn03021
]
HPB14_03940 (rho)
03019 Messenger RNA biogenesis [BR:
hcn03019
]
HPB14_03940 (rho)
Transcription machinery [BR:
hcn03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HPB14_03940 (rho)
Messenger RNA biogenesis [BR:
hcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPB14_03940 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
ATPase_2
S1CSD-TOTE-2
AAA_22
AAA_28
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AFI07487
LinkDB
All DBs
Position
809411..810727
Genome browser
AA seq
438 aa
AA seq
DB search
MNENAPTHKSSHKVKTHTPVSGYHIEDLRTYPTEKLLEIANKLKVENPQEFKRQDLMFEI
LKTQVTQGGYILFTGILEIMPDGYGFLRGFDGSFSDGHNDTYVSPSQIRRFALRNGDIVT
GQVRSPKDQEKYYALLKIEAINYLPSDEIKNRPLFDNLTPLFPDEQIKLEYEPTKVTGRM
LDLFSPVGKGQRALIVAPPRTGKTELMKELAQGITSNHPEVELIILLVDERPEEVTDMQR
SVKGQVFSSTFDLPANNHIRIAELVLERAKRRVEMGKDVVVLLDSITRLARAYNAVTPSS
GKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNS
EIVLARNIADRRIYPAFDILKSGTRKDNILLGKDRLTKVWVLRNVMQQMDDIEALSFVYS
KMQQTKDNEEFLNLMNEK
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgaacgaaaacgcacctacgcacaaaagttcgcacaaggtcaaaacccacacgccagtg
agcggttatcacattgaagatttacgcacctaccctactgaaaagcttttagaaatcgct
aacaagctcaaagtggaaaacccccaagaattcaaacgacaagacttgatgtttgaaatt
ttaaaaacccaagtcacgcaaggcggatacattctttttaccgggattttagaaatcatg
cctgatggctatggctttttaagagggtttgacgggagtttttcagacgggcataacgac
acatatgttagcccttctcaaatcaggcgttttgctttaaggaatggcgatattgttacc
ggtcaagtgcgatcccccaaagaccaggaaaaatactacgcccttttaaaaatagaagcc
atcaattatttgccttcagatgagattaaaaaccgccctttgtttgacaatctaaccccc
ctattccctgatgaacaaatcaaattagaatacgaacccactaaagttaccggcaggatg
ctggatttattcagccctgtggggaaaggtcaaagggctttgatcgttgcgccaccaagg
actgggaaaacggagctgatgaaagagctcgcccaaggcatcacttctaaccaccctgaa
gtggagctgattatccttttagtggatgagcgccctgaagaagttacagacatgcaacga
agcgttaaaggtcaagtttttagctccacttttgatttgccagccaataatcacataagg
atcgctgaattggttttagaaagggctaaaaggcgagtggaaatgggtaaagatgtggtg
gttttattggattctatcacccgtttagcaagggcgtataacgccgtaacgccctcaagc
ggtaaggttttaagtgggggtgtggatgcgaacgccttgcacaggcccaagcgctttttt
ggggccgcaaggaatattgaagaaggtgggagcttgacgattatcgctacggcgttgatt
gaaacgggatctagaatggatgaggtgatttttgaagaatttaaaggcaccgggaatagc
gaaatcgttttagcgaggaatattgcggataggcgcatttacccggcctttgatatttta
aaatccggcacacgaaaagacaatatcttgcttggcaaagaccgcttgactaaagtgtgg
gttttaaggaatgtgatgcaacaaatggacgacatagaagccttaagctttgtgtattct
aaaatgcaacaaactaaggacaatgaagaatttttaaatttaatgaatgaaaaataa
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