Helicobacter pylori HUP-B14: HPB14_05215
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Entry
HPB14_05215 CDS
T02035
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hcn
Helicobacter pylori HUP-B14
Pathway
hcn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HPB14_05215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcn03400
]
HPB14_05215
DNA repair and recombination proteins [BR:
hcn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HPB14_05215
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HPB14_05215
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
Kinesin
Microtub_bd
AAA_7
DUF87
HAM1_N
YqbF_HeH
AAA_22
Enkurin
Motif
Other DBs
NCBI-ProteinID:
AFI07727
LinkDB
All DBs
Position
complement(1098952..1100928)
Genome browser
AA seq
658 aa
AA seq
DB search
MPLFDLKSPYPPAGDQPQAIEALTKSLKNNNHYQTLVGVTGSGKTYTMANIIAQTNKPAL
IMSHNKTLCAQLYSEFKAFFPHNRVEYFISHFDYYQPESYIPRRDLFIEKDSSINDDLER
LRLSATTSLLGYDDVIVIASVSANYGLGNPEEYLKVMEKIKVGEKRAYKSFLLKLVEMGY
SRNEVVFDRGSFRATGECVDIFPAYNDAEFIRIEFFGDEIERIAVFDALERNEIKRLDSV
MLYAASQFAVGSERLNLAIKSIEDELALRLKFFKEQDKMLEYNRLKQRTEHDLEMISATG
VCKGIENYARHFTGKAPNETPFCLFDYLGIFEREFLVIVDESHVSLPQFGGMYAGDMSRK
SVLVEYGFRLPSTLDNRPLKFDEFIHKNCQFLFVSATPNKLELELSQKNVAEQIIRPTGL
LDPKFEVRDSDKQVQDLFDEIKSVVARDERVLITTLTKKMAEELCKYYAEWGLKVRYMHS
EIDAIERNHIIRSLRLKEFDILIGINLLREGLDLPEVSLVAIMDADKEGFLRSETSLIQT
MGRAARNANGKVLLYAKKITQSMQKAFEITSYRRAKQEEFNKIHNITPKTVTRTLEEELK
LRDDEIRIAKALKKDKMPKSEREKIIKELDKKMRECAKNLDFEEAMRLRDEIAQLRTL
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgcctttatttgatttaaaaagcccttacccaccagcaggcgatcagccccaagccata
gaagccttaacgaaaagcttgaaaaataacaaccattatcaaactttagtgggggttaca
ggaagcggtaagacttatacgatggccaatatcatcgctcaaaccaataaacccgctttg
atcatgagccataataagaccttatgcgcgcagctttatagcgagtttaaggcgtttttc
ccgcataatagggtggagtattttatctcccactttgattactaccagcctgaaagctat
atccctaggagggatttattcattgaaaaagacagctctattaacgatgatttggagcgt
ttgagattgagtgcgaccacctcgcttttaggttatgatgatgtgatcgtgatagcgagc
gtttcggctaattatggtttgggtaaccctgaagaatatttaaaagtcatggaaaaaatc
aaagtgggcgagaagcgcgcttacaagagctttttactcaagctagtggaaatgggttat
agccgtaatgaagtggtgtttgatagggggagctttagagcgaccggagaatgcgtggat
attttccccgcttataatgacgctgaatttattaggattgaattttttggcgatgagata
gaaaggattgcggtctttgacgctttagaaagaaatgaaatcaagcgcttggattctgtc
atgctttatgcggccagtcagtttgccgtagggagtgagaggttgaatttagccattaaa
agcattgaagatgaactcgctttaagattgaaattttttaaagagcaggataaaatgctt
gaatacaaccgcctcaaacaacgcaccgagcatgatttagaaatgattagcgcaaccggt
gtgtgtaagggcattgaaaattacgcgcgccattttacaggcaaagcccctaacgaaacg
cccttttgtttgtttgattatttagggatttttgagcgggagtttttagtcattgtagat
gaaagccatgtgagtttgccgcaatttggggggatgtatgcaggggatatgagcaggaaa
agcgttttagtggaatatggttttagattgcctagcactttagacaaccgccctttaaaa
tttgatgaatttatccataaaaattgccagttcctttttgtgtccgctacgcccaataag
ctagaattagagctttctcaaaagaatgtcgctgagcaaatcattcgccctacagggctt
ttagaccccaaatttgaagtgcgagacagtgataagcaagtccaggatttgtttgatgaa
atcaagtcagtggtggccagagatgaaagggtgctcatcaccacgctcactaaaaaaatg
gcagaagaattgtgcaaatattatgctgaatggggcttgaaagtgcgttacatgcatagt
gaaattgatgcgattgaaaggaaccacattatccgctctttaaggcttaaagaatttgac
attttaatagggatcaatcttttaagagaggggttggatttgcctgaagtctctttagta
gcgatcatggatgcggataaagaagggtttttaaggagcgaaacaagcctcattcaaacc
atggggcgagccgctagaaacgctaatggcaaggttttattatacgctaaaaagatcact
caaagcatgcaaaaagcctttgagatcactagttacaggcgcgccaaacaagaagagttc
aataaaatccataatattacccctaaaaccgttactcgcactttagaagaggaattgaaa
ttaagagacgatgagattagaatcgctaaagccttaaaaaaggacaaaatgcctaaaagt
gaaagggaaaaaatcattaaagaattggataaaaaaatgcgagaatgcgcgaaaaatttg
gattttgaagaagcgatgcgtttgagagacgaaatcgctcaattaagaacgctttaa
DBGET
integrated database retrieval system
