Helicobacter pylori HUP-B14: HPB14_05750
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Entry
HPB14_05750 CDS
T02035
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hcn
Helicobacter pylori HUP-B14
Pathway
hcn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HPB14_05750
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcn03019
]
HPB14_05750
03016 Transfer RNA biogenesis [BR:
hcn03016
]
HPB14_05750
Enzymes [BR:
hcn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HPB14_05750
Messenger RNA biogenesis [BR:
hcn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HPB14_05750
Transfer RNA biogenesis [BR:
hcn03016
]
Prokaryotic type
tRNA degradation factors
HPB14_05750
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AFI07828
LinkDB
All DBs
Position
complement(1211907..1213973)
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AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTLILASVCVEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPIKSVSACRIARVGNGFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQKLNALEEPLMLKALELAQKSLKETCTLYEEVFTPYQNELLFKEGEGII
FNERLLDLLTNQYFDEIIKGIESSALSERENVFKEVARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIQDKIRPDKRALEEVRPISIESNLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKTPIKERFMFHYNFPPFCVGEASSIGATSRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEVLYQALLQAKEARKHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKAKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQHMDR
CQVALKEGDSIKCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagagttcgctctcaaacaagtg
gccaaacaagccactagctctttaatgtatcgcttaggaaaaacccttattttagcgagc
gtgtgcgtagaaagagagcctgtgagtgaagattttttgcctttagtggtgcagttttta
gaaaaatcgtatgctgccggtaagatcccaggcggttttgttaaaagagaaggcagggcg
caagattttgaaatcttaacctctaggctcatagacaggactttacgccctttattccct
aaagattaccgctaccctacccaaatcactttaatggttttaagccatgatattgaaaat
gatttgcaagtttctgctttaaacgccgcttcagccgctctctttttggcccatatcgct
cccattaaaagcgtgagcgcttgcaggatcgctagggttggtaacggatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtccggcacaaaagag
agtttgaacatgatagaaatgcgatctttagggcaaaaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagaggttttcacgccctatcaaaacgagttgctttttaaagagggcgaaggaataatt
tttaatgaaaggctgttggatttattaacaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaaagaagtggctagaaaaatc
agcgaagcccactcagaattcagtttagaagaaattgaattgtctttagagaaggtgaaa
aaaaccgagatcagacgcatgattattcaagataaaatccgtccggacaagcgcgcgtta
gaagaagtgcggcccatttcaatagagagcaatttgctccctatggcgcacagctccatt
ttattcactagggggcaaactcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaaacccctatcaaagaacgcttcatgttccat
tacaatttccctcctttttgcgtgggcgaagcgagctctattggcgcgacttcaaggcgc
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagag
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcagggtctttagccctttatgcaagcggtgtggaaatttatgatttagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgccattttaagcgatattagc
ggcttagaagacgcagaaggcgatatggattttaagattgccgggaatttagaaggcatt
acggctatgcaaatggataccaaaatgagcggtatccaattagaagttttataccaagcc
ttactccaagctaaagaagcacggaaacatattttaaaaatcatgcatgaagcgaaagaa
aagattgtgatcaatttttcccatttgcccacaacggagatttttaatgtcgcgccagat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtggaaaagttt
gaggttaaaattgatttgaataaaccaagcggtgaagtgaaaatcatggggaataaagag
cgcgttttgaaagctaaggaatttattttaaactacttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgctagaagctcaagtgaaacgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttgagaaaacaacacatggacagg
tgtcaagtggctttaaaagaaggcgatagcatcaaatgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa
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