Halomonas chromatireducens: LOKO_00074
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Entry
LOKO_00074 CDS
T04292
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKO_00074 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_00074 (recQ)
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_00074 (recQ)
Enzymes [BR:
hco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LOKO_00074 (recQ)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOKO_00074 (recQ)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LOKO_00074 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AMC99178
UniProt:
A0A109UKM5
LinkDB
All DBs
Position
complement(79233..81218)
Genome browser
AA seq
661 aa
AA seq
DB search
MIEQTLQQVFGYGDFRPGQRPVIEAITAGRSAAAIFPTGSGKSLCYQLPALHLPHLTLVI
SPLLALMQDQLAFLARHGIAAASIDSGQSREEAAAVMEGVKRGDIRILMISVERLKNERF
RAFIRRVPISLMVVDEAHCISEWGHNFRPDYLKLPDYRREFGIAQVLLLTATATPRVIAD
MRSRFDIAESDVTATGFYRPNLHLEVAPVPAETRPRRLVAWLRPKLDAQPPAPTIVYVTL
QQTAERLAAYLSKAGLPATAYHAGLDSEIRERIQRDFMAGQMPCIVATIAFGMGIDKADI
RNVVHFDLPKSIENYSQEIGRAGRDGQPSDCLMLAGRDHLNVLENFVFGDTPEHYGIRQV
IDEVVAVSRGGAGSQWELMLNSLSQQSNIRPLPLKTLLVQLELRGIIAPRYSYFAEYRFR
LGEEPEALVARFEGERAAFVQAILDASQRARTWYTLDFEALARLGGERGVNTERGRVITA
LDYFVTKGWMTLESKQMTEVYEVLRQDIDPAALSDELHGYFRDKEQTEVERLHAMLALFE
SEACLSRRLAEWFGDDRVPQHCGHCSACHGQVARLPQGEAPPPLAIDAVEGLAGELIQQL
AASQDRHPLTPDLITRFLCGLTTPLLTRLKARRLAGFGALEAHHYAEVRELVVQSGLSPT
T
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacagacgttacagcaggtcttcggctacggcgatttccgccccggccagcgc
ccggtgatcgaggcgataacggcgggccgttcggcggcggcgatctttcccaccggctcc
ggcaagtcgctctgctaccagttgcccgccctgcacctgccccacctgaccctggtcatc
tcgccgttgctggcactgatgcaggaccagctggcgttcctcgcgcgccacgggatcgcc
gccgccagcatcgactcgggccagagccgcgaggaggccgccgccgtgatggagggcgtc
aagcggggcgatattcggatcctgatgatatcggtggaacggctcaagaacgaacgcttc
cgcgccttcatccgccgcgtaccgatctcgctgatggtggtggacgaagcccactgcatc
tcggagtggggccacaactttcggccggactacctcaagctgcccgactaccggcgcgag
ttcggcattgcccaggtactgctgctgaccgccacggccaccccgcgggtgatcgccgac
atgcgctcgcgtttcgacatcgccgagagcgacgtcaccgccaccggcttctatcgtccc
aacctgcatctggaggtggcgccggtgccggccgagacgcgcccgcgccgcctggtcgcg
tggctgcgacccaagctcgacgcccagccccccgcgcccaccatcgtctacgtcaccctg
cagcagaccgccgaacgcctggccgcctacctgagcaaggccgggctccccgccaccgcc
taccacgccgggctcgacagcgagatccgcgagcgcatccagcgcgacttcatggcgggc
caaatgccctgcatcgtcgccaccatcgccttcggcatgggcatcgacaaggccgacatt
cgcaacgtggtgcacttcgacctgcccaagtcgatcgagaactatagccaggagatcggc
cgggccggccgcgacgggcagccttccgactgcctgatgctggccggacgcgatcacctc
aacgtgctcgagaacttcgtcttcggcgacaccccggaacactacggcattcgccaggtg
atcgacgaggtggtcgcggtgagccggggcggcgccggcagccagtgggaactgatgctc
aacagcctctcgcagcagagcaacattcgcccactgccgctgaagaccctgctggttcag
ctggagctgcgcggcatcatcgccccgcgctacagctacttcgccgaataccgcttccgc
ctgggcgaggagcccgaggcactggtcgcccgcttcgagggcgagcgtgccgccttcgtg
caggcgatcctcgacgcctcccagcgcgcccggacctggtacaccctggatttcgaggca
ctcgcccgcctgggcggcgaacggggcgtgaacaccgagcgcggccgggtgatcacggca
ctggactacttcgtcaccaagggctggatgacgctggaaagcaagcagatgaccgaggtc
tacgaggtgctgcgccaggacatcgatccggccgccctgagcgatgaactgcatggctat
ttccgggacaaggagcagacggaggtggagcgactccacgccatgctggccctgttcgaa
agcgaggcctgcctgagccgtcgcctggcggagtggttcggcgatgaccgagtgccacag
cactgcggccactgctccgcctgtcacgggcaggtcgcccgcctgccccagggcgaggcg
ccaccaccgctggcaatcgacgccgtcgaggggctggcgggcgagctgatccagcagctc
gccgccagccaggatcgccatccgctcactcccgacctgatcacacgcttcctgtgcggc
ctcaccacgccgctgctcacccgactcaaggcgcggcggttagccggcttcggtgctctg
gaggctcaccactacgccgaggtgcgagagctggtggtccaatcggggctcagccctaca
acctga
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