Halomonas chromatireducens: LOKO_00111
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Entry
LOKO_00111 CDS
T04292
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LOKO_00111 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hco03021
]
LOKO_00111 (rpoC)
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_00111 (rpoC)
Enzymes [BR:
hco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LOKO_00111 (rpoC)
Transcription machinery [BR:
hco03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LOKO_00111 (rpoC)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LOKO_00111 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF7129
DUF3150
RnfC_N
DUF6744
Motif
Other DBs
NCBI-ProteinID:
AMC99209
UniProt:
A0A0X8HB39
LinkDB
All DBs
Position
118903..123123
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLVKVLKSQSQSEEFDAIKISLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGIICEKCGVEVTKAAVRRERMGHIELASPVAHIWFLKSL
PSRIGMFLDMTLRDIERVLYFESFVVIDPGMTTLERGQLLNDEQYFEALEEFGDDFDARM
GAEAIQALLKDIELPEEIDRLREEIPQTNSETKIKKLSKRLKLLEAFHNSGNAPAWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYSKLQSQGHASTIKAAKKMVERELPEVWDILAEVIREHP
VLLNRAPTLHRLGIQAFEPLLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMATNNVLSPANGDPIIVPSQDVVLGLYYMTREKINAKGEGMVFSGLNEVERAFGTQ
SVSLHARVKVRLTEVVIDEETGEQSTVRTIYDTTAGRALLFRILPDGVPFELVDQPMKKK
AISKLLNEVYRRAGLKPTVIFADQLMYTGFRMATWSGASIGVNDFVIPDAKVEIVDAAEA
EVKEIEDQFSSGLVTAGEKYNKVIDIWSKANDKVAKAMMRGIEKETVIDRDGNEVEQDSF
NSVFIMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGA
RKGLADTALKTANSGYLTRRLVDVAQDMVITETDCGTERGLTLHPVIEGGDIIVSLAQRV
LGRVVAQDVIDPATDEVLIEKGTLLDEAWCEHLDTMGVDEIVVRSAITCESAHGVCACCY
GRDLARGHQVNIGESVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAVDSVQVKHGGRGP
LHNMKVVERADGKLVVVSRSSALAVADDHGREREYYKLPYGAELSIKDGDAVDAGQAVAK
WDPHTHPIIAEVEGKVHYADMDEGMTIHRSVDEMTGLSSIEVIESAARPQAGREKRPMIL
LTDEAGEPISVTGSNTPVQYLLPGKSIVSVENGAKIGIGEIVARIPVEASGNKDITGGLP
RVADLFEARKPKEPAILAEVSGVISFGKETKGKRRLTISPEDGGDPFEALIPKWRQIAVF
EGESVEKGEVISDGPSNPHDILRLLGVAELAKYITAEIQEVYRLQGVGINDKHIEVIVRQ
MLRKVEITDSGDSDFIPGDQVELVRVLEQNARLEKAEKFPAKYQRVLLGITKASLATESF
ISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAHHQERRRKREDTERL
LHPSAFDVEQELGAQLTALDSDDDDL
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttggtgaaagtcctcaaatcgcagtcacagtccgaagagttcgatgcgatc
aagatctcgctcgcctcgccggacatgattcgctcctggtccttcggtgaggtcaagaag
cccgagaccatcaactaccgtaccttcaagccggagcgggatggcctgttctgcgccaag
atctttggcccggtgaaggactacgagtgcctctgcggcaagtacaagcgcatgaagcac
cgcggcatcatctgcgagaagtgcggcgtcgaagtgaccaaggccgcggtgcgccgcgag
cgcatgggccacatcgagctggcctcgccggttgcgcacatctggttcctgaagtcgctg
ccgtcacgcatcggcatgttcctggacatgaccctgcgcgacatcgagcgggtgctctac
ttcgaaagcttcgtggtcatcgatccgggcatgaccaccctggagcgcggccagctgctc
aacgacgagcagtacttcgaggccctcgaggagttcggtgacgacttcgacgcccgcatg
ggcgccgaggcgatccaggcgctgctcaaggacatcgagctgccggaagagatcgaccgg
ctgcgcgaggagatcccgcagaccaactccgagaccaagatcaagaagctctccaagcgg
ctcaagctgctggaagccttccacaattccggcaacgcgccggcgtggatggtcatggag
gtgctgccggtactgccgccggacctgcgtccgctggtaccgctggacggcggccgcttc
gcgacctccgacctgaacgacctgtatcgccgggtgatcaaccgcaacaaccgcctgaag
cgtctgctcgacctcaatgcgccggacatcatcgtgcgcaacgagaagcgcatgctccag
gaggcggtcgacgccctgctggacaacggccgtcgcggccgggccatcaccggctcgaac
aagcgcccgctgaagtccctggccgacatgatcaagggcaagcaggggcgtttccgtcag
aacctgttgggcaagcgcgtcgactactccggccgttcggtcattaccgtcggcccgacc
ctgcgcctgcatcagtgtggcctgcccaagaagatggcgctggagctgttcaagccgttc
atctattcaaagctgcagtcgcagggtcatgcctcgacgatcaaggcggccaagaagatg
gtcgagcgcgagctgcccgaggtgtgggatatcctcgccgaggttatccgcgagcacccg
gtgctgctcaaccgcgcgccgaccctgcaccgtctcgggatccaggccttcgagccgctg
ctgatcgaaggcaaggcgatccagctgcacccgctggtgtgtgccgcctacaacgccgac
ttcgacggtgaccagatggcggtacacgtgccgctgacgctggaagcccagctcgaggcg
cgggcgctgatgatggccaccaacaacgtgctgtcaccggccaacggcgatcccatcatc
gtgccgtcccaggacgtggtgctgggcctgtactacatgacccgcgagaagatcaacgcc
aagggcgagggcatggtgttctccggtctcaacgaggtcgagcgcgccttcggcacccag
agcgtctcgctgcatgcccgggtcaaggtgcgtctcaccgaggtggtgatcgacgaggag
accggcgaacagagcacggtgcgtaccatttacgacaccaccgccggtcgtgccctgctg
ttccgtatcctgcccgacggcgtgcccttcgagctggtcgaccagccgatgaagaagaag
gcgatctccaagctgctcaacgaggtgtatcgtcgtgccggcctcaagccgacggttatc
ttcgccgaccagctgatgtacaccggtttccgcatggcgacctggtccggcgcctccatc
ggcgtcaacgacttcgtcatcccggatgccaaggtcgagatcgtcgatgcggccgaggcc
gaagtgaaggagatcgaggatcagttctcctcgggcctcgtcaccgctggcgagaagtac
aacaaggtcatcgatatctggtccaaggccaacgacaaggtggccaaggcgatgatgcgc
gggatcgagaaggagaccgtgatcgaccgtgacggcaacgaggtcgagcaggactccttc
aacagcgtcttcatcatggccgactccggtgcccggggtagtgccgcccagatccgccag
ctggcgggcatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatc
gtcgccaacttccgtgaaggccttaacgtactccagtacttcatctcgacccacggcgcg
cggaaaggcctggcggatacggcactgaagaccgccaactccggttacctgacccgtcgc
ctggtcgacgtggcccaggacatggtgatcaccgagaccgactgcggcaccgagcgcggt
ctgaccctgcacccggtcatcgagggcggcgatatcatcgtctccctggcccagcgtgtg
cttggccgtgtggtggcccaggacgtcatcgatccggccaccgacgaggtgctgatcgag
aagggcaccctgctcgacgaagcctggtgcgagcatctcgacaccatgggtgtcgacgaa
atagtggtgcgcagtgccatcacctgcgagtctgcgcacggcgtctgtgcctgctgctac
ggccgtgatctggcccgtggccatcaggtcaacatcggcgagtcggtgggtgtcatcgcc
gcccagtcgatcggtgagcccggcacccagctgaccatgcggacattccacatcggtggc
gcggcatcgcgtgcctcggcggtggacagcgtccaggtcaagcacggcggtcgcggaccc
ctgcacaacatgaaggtcgtcgagcgcgccgacggcaagctggtggtggtctcccgctcc
agcgccctggccgtcgccgacgaccatggccgcgagcgcgagtactacaagctcccctac
ggtgccgagctttccatcaaggatggcgatgccgtggatgccggccaggccgtggccaag
tgggatccgcacacccacccgatcattgccgaggtcgagggcaaggtgcactacgccgac
atggacgagggcatgaccattcaccgcagcgtggatgagatgaccggcctctcgtccatc
gaggtgatcgagtccgccgcccgtccccaggccggtcgcgagaagcgtccgatgatcctg
ctcaccgacgaagccggcgagccgatcagcgtcaccgggtccaatacgcccgtccagtac
ctgctgccgggcaagtccatcgtctcggtggagaacggtgcaaagatcggcattggcgag
atcgtcgcccgtatcccggtggaagcgtccggcaacaaggacatcaccgggggtctgccc
cgcgtggccgacctgttcgaagcgcgcaagccgaaggagccggcaatcctcgccgaagtc
agcggcgtgatcagcttcggcaaggagaccaagggcaagcgtcgcctgacgatctctccc
gaggacggtggcgatccgttcgaggcgctgattccgaagtggcgccagatcgctgtcttc
gaaggcgagagcgtcgagaagggcgaggtgatctccgacggcccgagcaacccgcacgac
atcctgcgactgctgggcgtggcggagctggccaagtacatcaccgccgagatccaggag
gtctatcgcctccagggcgtgggcatcaacgacaagcacatcgaagtgatcgtgcgtcag
atgctgcgcaaggtcgagatcaccgattctggtgattccgacttcatcccgggcgaccag
gtcgaactggtgcgggtgctggagcagaatgcacgcctggagaaggccgagaagttcccg
gccaagtaccagcgggtgctgctgggtatcaccaaggccagcctggccaccgagtcgttc
atctctgcggcctccttccaggagaccacgcgggtgctgaccgaggcggcggttaccggc
aagcgcgactacctgcgcggcctgaaggagaacgtggtggtcggccgactgattccggca
ggaaccggtctggctcaccaccaggagcgtcgccgcaagcgtgaagacaccgagcgtctg
ctccacccgtcggccttcgatgtcgagcaggagctgggcgcccagctcaccgcgctcgac
tcggacgatgacgacctgtag
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integrated database retrieval system
