Halomonas chromatireducens: LOKO_00160
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Entry
LOKO_00160 CDS
T04292
Symbol
rapA
Name
(GenBank) RNA polymerase-associated protein RapA
KO
K03580
ATP-dependent helicase HepA [EC:5.6.2.-]
Organism
hco
Halomonas chromatireducens
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hco03021
]
LOKO_00160 (rapA)
Transcription machinery [BR:
hco03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
RNA polymerase-associated proteins
LOKO_00160 (rapA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapA_C
Tudor_1_RapA
Tudor_RapA
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
AMC99258
UniProt:
A0A109UKN8
LinkDB
All DBs
Position
complement(161822..164782)
Genome browser
AA seq
986 aa
AA seq
DB search
MSDFSPGQRWISDGEAELGLGTILSCDQRSVTVLFGASQETRTYSSRQAPLTRVAFDSGD
RIQSSDGWQLLVEDSKEVDGLIVYIGEDAQGQLRELPEAKLADTMQFDQARDRLLTGQVD
RNDWFDLRFRTLHHFNRIEQNPALGMSGPRIDLIPHQLYIADEVSRRHAPRVLLADEVGL
GKTIEAGLILHRLLLTGRAERALILVPPSLTHQWLVELLRRFALDVTLLDEQQSLAQAES
NPFESGQLVLASQDWLFANPHRQAQAEACSWDLLIVDEAHHLDWSAERVGPGYACVDRLA
STVPGVLLLTATPEQMGLESHFARLRLLDPDRYHSLERFRDEEQHYVEVARAIDALERLP
AGDGSDGENRGRVAAVIEEPDSLALLATLTNPESDAHQQESARNQLRDQLLDRHGTGRVM
FRNSRRHVGGFPERRLHLATLAPPSPYRRAFRKLERDEDYLDELLIETGLDHPDVLIYPD
AMYRALTEDPLNAEPWWQFDNRVTWLMERLSDDGEHGFAGDKVLVIAHGRETAEELAEAL
RVLGGIHAPVFHEGLSLVERDRAAADFADEEEGSQLLVCSEIGSEGRNFQFCRHLVMFDL
PQHPDLLEQRIGRLDRIGQRHAIEIHVPLFEGSPAERLLRWYRDGMDAFLAPHGVGNELF
DAFGDALSEALLDDEALEEVIAETRMLFLSRLAERDAGRNRLLELNACRPARAEAVASAI
RELDDDAALPRYLDQAMDVFGVDSQELGNGLLHLQPGQHMLDGLPGLAKGEEGFTATLSR
SRALARDDVQRLSWEHPLLREMMGRIIDGTMGNTALSLLKHPAIPAGRLMVELVFRTHCP
APRQLHVNRFLPPTAVRVLLDESGAVLTDKVSFTGLSKNLQKVKKAMARDLIRSRHDQLR
GLLAQGESEAERELPSIIEAAQTRMRSELDSDLARLEALARLNPAVREEELDAMRRERRA
LDTSIDGARLRLDAVRVIVTVDQDSR
NT seq
2961 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatttttcacccggccaacgctggatcagtgacggcgaggccgagctgggtctg
ggcaccattctcagttgcgaccagcgcagcgtcaccgtgctgttcggcgccagccaggaa
acccgcacctatagcagtcgacaggcacccctgacgcgagttgccttcgacagcggcgat
cgcatccaatcttccgacggctggcagctgctggtcgaggacagcaaggaggtcgacggg
ctgatcgtctatatcggtgaggatgcccagggccagctgcgagaactgcccgaagccaag
cttgccgataccatgcagttcgatcaggctcgcgatcgcctgctgaccggccaggtggac
cgcaacgactggttcgacctgcgctttcgcacgctccaccacttcaaccgtatcgagcag
aatcccgcactgggcatgtccggcccccgtatcgacctgatcccgcaccagctctatatt
gccgacgaggtctcccgccggcatgcccctcgggtgctgctcgccgatgaggtgggcctg
ggcaagaccatcgaggcgggcctgatcctgcaccggctgctgctgaccggccgcgccgaa
cgggcactgatcctggtgccgccgagcctgacccaccagtggctggtggaactgctgcgc
cgcttcgccctggacgtgaccctgctcgacgagcagcagagcctggcccaggccgagtcc
aaccccttcgagtccggccagctggtgctcgccagccaggattggctgttcgccaacccg
catcgccaggcccaggccgaggcctgcagctgggacctgctgatcgtcgacgaagcccat
cacctggactggagcgccgagagggtcggccctggctacgcctgcgtggatcgcctcgcc
tcgacggtacccggcgtgttgctgctgaccgcgacaccggagcaaatggggctggagagc
cacttcgcccgcctgcgcctgctcgacccggaccgctaccacagtctcgagcgcttccgc
gacgaggagcagcactatgtggaggtggcccgggccatcgatgccctggagcgcctgcct
gcaggcgacggcagcgacggggagaatcgcgggcgggttgcggcggtgattgaggagccc
gacagcctggccctgctggccaccctgaccaaccccgagagcgacgcacaccagcaggag
agcgctcgcaatcagctgcgcgaccagctgctggaccgccacggcaccggccgggtgatg
ttccgcaacagccgccgtcacgtcggcggcttccccgagcgccgcctgcacctggcgacc
ctggccccgccttccccctaccggcgcgccttccgcaagctcgagcgcgacgaggactac
ctcgacgagctgctgatcgagaccggactcgatcatccagatgtgttgatctacccggac
gccatgtatcgcgccctgaccgaggatccgctcaacgccgagccctggtggcaattcgac
aaccgggtaacgtggctgatggagcggctgagcgatgacggcgagcacggcttcgctggc
gacaaggtgctggtgatcgcccacggccgcgaaacggccgaggagcttgccgaggcactg
cgggtgctgggtggcatccatgccccggtcttccatgaaggcctgagcctggtggagcgg
gaccgtgccgccgctgactttgccgacgaggaggagggcagccagctgctggtctgctcg
gagatcggctcggaggggcgcaactttcagttctgtcgccacctggtgatgttcgacctc
ccccagcatcccgacctgctcgagcagcgcatcggccgcctggatcgcattggccagcgc
cacgccatcgagatccatgtgccgctgttcgagggcagtcccgccgagcgactgctgcgc
tggtaccgggacggcatggatgccttcctggcaccccacggtgtgggcaacgaactcttc
gatgccttcggcgacgctctctccgaggccctgctcgacgatgaggcgctggaagaggtc
attgccgaaacccgcatgctcttcctcagccgcctggccgagcgtgatgccggacgcaac
cggctgctggaactcaatgcctgccgtccggcacgcgccgaggcggtggccagtgccatc
cgcgagctggacgacgatgccgcactgccccgttacctggatcaggccatggatgtcttt
ggcgtcgacagccaagagcttggcaacggcctgctgcacttgcagccaggccagcacatg
cttgatggcctcccgggcctggccaagggcgaagagggttttacggcaaccctctcccgg
tcccgcgccctggcccgcgacgatgttcagcggctctcctgggagcacccgctgctgcgc
gagatgatgggacggatcatcgatggcaccatgggcaataccgccctgtctttgctaaag
catccggcgattcccgctgggcgactgatggtggagctggtcttccgcactcactgtcca
gcaccgaggcagctgcatgtgaaccgcttcctgccgcccaccgccgtgcgggtactgctc
gacgaatccggcgccgtactcaccgacaaggtctccttcacggggctgtcgaagaacctg
cagaaggtcaagaaggcgatggcaagggatttgatccgcagccgtcacgatcagctgcgt
gggctgctcgcccagggcgagtcggaagccgaacgggaactgccgagcatcatcgaagcg
gcccagacccgcatgcgcagcgagctggatagcgacctcgcccgcctggaggccctggcc
cggctcaacccagccgtgcgcgaggaggaactcgacgccatgcggcgcgaacgccgtgcg
ctggacacgtccattgatggagcccggctacggcttgacgccgtgcgggtaatcgtcacg
gtggaccaggatagccgctga
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