Halomonas chromatireducens: LOKO_01040
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Entry
LOKO_01040 CDS
T04292
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKO_01040 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_01040 (rhlE)
Enzymes [BR:
hco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOKO_01040 (rhlE)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOKO_01040 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
P-loop_SecA
HI1480
AAA_22
Sacchrp_dh_NADP
Motif
Other DBs
NCBI-ProteinID:
AMD00117
UniProt:
A0A0X8HCH9
LinkDB
All DBs
Position
complement(1097336..1098676)
Genome browser
AA seq
446 aa
AA seq
DB search
MTFSELGLRAELLRAVEAQGYTIPTPIQRQAIPAVLNGGDLLASAQTGTGKTAGFTLPML
QRLAEGPRPGKRQIRALILTPTRELAAQVGESVADYGRHLTMKSHVIFGGVGQQPQVDAI
RPGLDVLIATPGRLLDLHQQKHVDLSHVEILVLDEADRMLDMGFIHDIKKILRVLPEKRQ
NLLFSATFSNEIQALAGKLLDNPAMIEVARRNTTAETVDQSIYRVDREKKRELLAHLITR
HSWNQVLVFTRTKHGANRLAEQLSKQDIPAMAIHGNKSQSARTKALAAFKTGDLQVLVAT
DIAARGLDINELPHVVNFELPNVAEDYVHRIGRTGRAGSDGQAVSLVCVDEHGLLKGIER
LIKRDLAKHIEPGFEPDPNAKPEPIENGRGGRSGRSGGQGQRGNGNRGSTNGNRGAASRG
SEGNRSGDDNRAPRRRRSRGQGARQA
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgaccttttccgaactcggcctgcgtgccgaactgctccgtgccgtcgaggcacagggc
tataccattccgacccccattcagcgccaggcgatacctgccgtcctcaatggtggcgac
ctgctggccagcgcccagaccggcaccggcaagacggccggcttcaccctgccgatgctg
caacgcctggcggaagggccgcgacccggcaaacgccagattcgcgccctgatcctgacg
ccgacccgtgagctggctgcccaggtgggcgaaagcgtggccgactacggtcgccacctc
accatgaagagccatgtgatcttcggcggcgtaggtcagcagccccaggtggatgccatc
cgccccggcctggacgtcctgatcgccacgcccggccgtctgctcgacctgcaccagcag
aagcacgtggacctctcccacgtcgagatcctggtgctggacgaagccgatcgcatgctg
gatatgggcttcatccacgacatcaagaagatcctgcgcgtgctgcccgagaagcgccag
aacctgctgttctcggccaccttctccaacgagatccaggcacttgccggcaagctgctc
gataacccggccatgatcgaggtcgcgcgtcgcaacaccaccgccgaaaccgtcgaccag
tcgatctatcgcgtcgacagggagaagaagcgcgagctgctggcccacctgatcacccgt
cacagctggaaccaggtgctggtgttcacccgcaccaagcatggcgccaaccgactggcc
gagcagctctccaagcaggacatccctgccatggcgattcacggcaacaagagccagtcg
gcgcgtaccaaggccctggccgccttcaagaccggcgacctgcaggtattggtggcaacc
gacatcgcggctcgcggcctcgatatcaacgaactgccccacgtggtcaatttcgaactg
cccaacgttgctgaagactacgttcaccgtattggccgcaccggccgagccggcagcgac
ggccaggccgtttcactggtctgtgtcgacgagcatggtctgctcaagggcatcgagcgg
ttgatcaagcgcgacctggccaagcatatcgagcccggcttcgagcccgaccccaatgcc
aagcccgagccaatcgagaatggacgcggcggacgcagtggccgctccggtggacagggg
cagcgtggcaacggcaatcgcggcagcaccaacggcaaccgcggtgccgcgtcgcgtggc
agtgaaggcaaccgaagcggtgacgacaaccgggcaccacgccggcgtcgcagccgtggt
cagggcgctcgccaagcctga
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