Halomonas chromatireducens: LOKO_01188
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Entry
LOKO_01188 CDS
T04292
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKO_01188 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_01188 (rne)
03009 Ribosome biogenesis [BR:
hco03009
]
LOKO_01188 (rne)
Enzymes [BR:
hco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LOKO_01188 (rne)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOKO_01188 (rne)
Ribosome biogenesis [BR:
hco03009
]
Prokaryotic type
rRNA processing factors
LOKO_01188 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AMD00261
UniProt:
A0A120JVU5
LinkDB
All DBs
Position
complement(1249892..1252999)
Genome browser
AA seq
1035 aa
AA seq
DB search
MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGKITRVEPSLEAAFVDF
GADRHGFLPLKEISREYFLKETSGRPSIKEVLKEGQEVIVQVDKEERGNKGAALTTFISL
AGRFLVLMPNNPRAGGISRRIEGDERSQLKEAMGELTVPDKMGVIVRTAGIGRSAEELQW
DLDYLVQVWESITEEAVKRPAPFLIYRESNVIIRAMRDYLRQDIGEVLIDSPVVHQEALT
FIRQVMPSYQQKIKLYADEVPLFSRFQIESQIETAYEREVKLPSGGSIVIDHTEALVSID
INSARATRGSDIEETALQTNSEAADEIARQLRLRDIGGLVVIDFIDMSPARNQREVENRM
RDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSLSLSI
MRLIEEEAMKERSAQIRAILPVPVATYLLNEKRAVLADIEARQDVRVLVLPNPDMDTPHY
DVQRLRDDHVEEDGEQEKSSFELSVDTEVGKEPDASIAKPVLRTEAAVKTVIHNEPAPAS
LQHQQQQPQQSASEPATPALPSSPGVLGRLVKGMAKWLGTTDSTEAESQTPRKPAAAEPQ
SRSDDRNGRGRQRRPRGEGRDDARAQRSQGRQQEGGRGDRQANERQESQAGSGRGDTRGN
RGGRGQSRQDRSQQQDRQEKPQPQEESRQPSRGRDDSARRQKPDSAEKPQEKVAAKSAES
AKPDETIKVDDGKPKRTRNNPRNRTRKHAINPQAEAEQKRLQAEAADTAQAQPESPEPVE
TAADKLKPAETAADTHKAEAKPEQPKAEQSKPEAPKPAEKAADAPKAEANPEQPKAEQPK
PETPKPAEKAADAPKAEAKPEQPKAEQPKPEAPKPAEKAVDAPEAETKPEQPKAEQPKPE
APKPAEKAVDAPKAETKPEQPKAEQPKPEASKPAEKAADAPKAEAKPEQPKAEQAKAEQP
KPEAPKSAEKPADAPKAEAKPEQPKAEQPGEADADADAPKDETPAQRRRRRRAHNDPREI
RRREQEAKAQDGKQG
NT seq
3108 nt
NT seq
+upstream
nt +downstream
nt
atgaaacggatgctcatcaatgcgacccagcctgaagaactgcgggttgctctggtcgat
ggacaacgcctttacgacctggacatcgaatccggtgccagggaacagaaaaaagccaac
atctaccgcggcaagattacccgcgtagagccttccctcgaagccgccttcgtcgacttc
ggtgccgatcgccatggcttccttcccctcaaggagatttcccgcgaatatttcctgaag
gaaacttcgggacgccccagcatcaaggaggtgctcaaggagggacaggaagtcatcgtt
caggtggacaaagaggagcgcggcaacaagggcgctgcacttaccacctttatcagtctg
gccggccgcttcctggtactgatgcccaacaacccccgtgccggcggcatctcgcgccgc
atcgagggtgacgagcgcagccagctcaaggaggccatgggcgagctcaccgtaccggac
aagatgggcgtgatcgtgcgtaccgccggcattggtcgcagtgccgaagagctccagtgg
gacctcgactacctggtccaggtgtgggagtcgatcaccgaggaagccgtcaagcgaccg
gctccgttcctgatctatcgcgaatccaatgtcattatccgcgccatgcgcgattacctg
cgccaggatatcggcgaggtgctcatcgacagcccggtcgtgcatcaggaagcgctgacc
ttcatccgccaggtgatgccctcctaccagcagaagatcaagctctacgccgatgaggtt
ccgctgttctcgcgcttccagatcgaatcgcagatcgagaccgcctacgagcgtgaagtg
aagctgccctccggcggctccatcgtcatcgaccacaccgaggcactggtctccatcgat
atcaactcggctcgcgccacccgtggcagcgatatcgaagagaccgccctgcagaccaac
tccgaggccgccgacgagatcgcccgccagctgcgtctacgcgatatcggtggtctggtg
gtgatcgatttcatcgacatgagccccgcgcgtaaccagcgggaagtcgagaaccgcatg
cgcgatgcgctcaagctggaccgcgcccgggtgcagatcggccgcatatcgcgcttcggc
ctgatggaaatgtctcgccagcgtctgcgcccctccctgggtgaaaccagcggtgtcgtc
tgtccccgctgtaacggccagggcaccatccgtgacgtgcgctccctctcgctatccatc
atgcgccttatcgaagaagaggccatgaaggagcgcagcgcacagatccgcgccatcctg
ccggtgccggttgcgacctacctgctcaacgagaagcgtgccgtgctggccgatatcgag
gcccgccaggacgtgcgtgtgctggtactgcccaacccggacatggacacgccccactac
gacgttcagcgcctgcgcgatgaccacgtcgaggaggatggcgagcaggagaagtccagc
ttcgagctctcggtcgacaccgaagtgggcaaggagccggacgccagcattgccaagccg
gtgttgcgtaccgaagcggcggtgaagacggtcatccataacgagccggcgcccgcatcg
ctccagcatcagcaacaacagccgcagcagagcgccagcgaaccggcgacaccggcacta
cctagcagccccggggtgctcggccgcctggtgaagggcatggccaagtggctgggaacc
actgacagcaccgaggccgaaagccaaacgccccgcaagcctgccgcagccgagccgcag
tcccgcagcgacgaccgtaatggccgtggccgccagcgccggccgcgtggcgaagggcgt
gacgatgctcgcgctcagcgcagccagggtcgccagcaggaaggcggtcgcggcgatcgc
caggccaatgagcgtcaagaaagccaagccggttcagggcgtggcgacacgcggggcaat
cgtggcggtcgtggccagagccggcaggacaggtctcaacagcaggatcgtcaggagaag
cctcagccgcaggaggaaagccggcaaccctcgcgcggccgtgacgactcggcccgtcgt
cagaagccggatagcgccgagaagccgcaggaaaaggtagcggcgaagtctgccgagagt
gcgaagcccgatgaaaccatcaaggtggatgatggcaagccgaagcggacacgtaacaac
ccgcgcaatcgtacacgcaagcatgccatcaacccccaggctgaagccgagcagaagcgc
ctgcaggccgaagccgcggataccgcccaggcccagcccgagtcgcccgagccggtagag
acagcagccgataagctcaagccggcagagacagcggccgacacgcacaaggcggaagcc
aagcccgagcagccgaaggccgagcagtccaagccagaggcgcccaagccggcagagaaa
gcggccgacgcgcccaaagcggaagccaaccccgagcagccgaaggccgagcagcccaag
ccagagacgcccaagccggcagagaaagcggccgacgcgcccaaggcagaagccaagccc
gagcagccgaaggccgagcagcccaagccagaggcgcccaagccggcagagaaagcggtc
gacgcgcccgaggcggaaaccaagcccgagcagccaaaggccgagcagcccaagccagag
gcgcccaaaccggcagagaaagcggtcgacgcgcccaaggcggaaaccaagcccgagcag
ccaaaggccgagcagcccaagccagaggcgtccaagccggcagagaaagcggccgacgcg
cccaaagcggaagccaagcccgagcagccgaaagccgagcaggcgaaggccgagcagccc
aagccagaggcgcccaagtcggccgagaagcccgccgacgcgcccaaggcggaagccaag
cctgagcagccgaaggccgagcagcccggtgaggcagacgcggatgccgacgcccccaag
gacgaaacgccggcacagcgccgtcggcgccgtcgtgctcacaacgatccgcgggagatc
cgccgtcgtgagcaggaagccaaggcccaggatggcaagcagggctga
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