Halomonas chromatireducens: LOKO_01268
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Entry
LOKO_01268 CDS
T04292
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hco
Halomonas chromatireducens
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hco03032
]
LOKO_01268 (topA)
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_01268 (topA)
Enzymes [BR:
hco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LOKO_01268 (topA)
DNA replication proteins [BR:
hco03032
]
Prokaryotic type
DNA Topoisomerases
LOKO_01268 (topA)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LOKO_01268 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Zn_ribbon_16
Motif
Other DBs
NCBI-ProteinID:
AMD00336
UniProt:
A0A109ULD1
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Position
1327797..1330424
Genome browser
AA seq
875 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSEFIVKSSVGHIRDLPTSGSGKTASDPKERARQAAATR
KMSPEEKAEYKQHRAKDQLIRRMGIDPEHGWKAHYEILPGKEKVVAELQKLAEKADAVYL
ATDLDREGEAIAWHLKETIGGEDSRYKRVVFNEITKNAIQEAFTEPGSLNIPRVEAQQAR
RFLDRVVGFMLSPLLWAKIARGLSAGRVQSVAVRLIVEREREIRAFVPEEFWDVHADLVS
SDGEPVRFELVRQDGKAFRPTSEAETMERIAALRKASLAITAREDKPTRSKPNAPFITST
LQQAASGRLGFSVKKTMTLAQRLYEAGYITYMRTDSTNLSKDAVENVREYINAEFGSRYL
PEAPNRYSSKEGAQEAHEAIRPSEVQRKAGELAGMERDAERLYELIWRQFVACQMTPAEY
LSSTLTVETAGYELRAKGRVLKFDGYTRVMKPAGKNEDQALPDLPTGTPMSLAALDPRQH
FTKPAARYTEASLVKELEKRGIGRPSTYASIISTIQDRGYVKLENRRFYAEKLGDIVTER
LKESFPDLMDFSFTARMEDGLDEVAEGERNWQELLDAFYAEFREELEAAQSEDGMRPNQP
VPTDIDCPTCGRKMQIRTASTGVFLGCSGYNLPPKERCKTTIDLLPGEEAVAADADEEAE
TEALRAKHRCPKCGTAMDSYLIDEQRKLHICGNSPDCDGYEVEQGRFRIKGYDGPTIECD
KCGSEMQLKSGRFGKYFGCTNSECKNTRKLLKSGEVAPPKMDPIPMPELACQKVEDHYVL
RDGASGLFLAASKFPKNRETRPPLVRELKAHAEALPEKYHYLLDAPVEDPDGRPSQIRFS
RKTKEQFVMTEEEGKATGWKAFFDNGRWQVEDKRK
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagtcattggtcatcgtcgagtcgccggccaaggccaagacgatcaacaagtat
ctcggcagcgagttcatcgtgaagtcgagcgtgggccatatccgcgacctgccgaccagc
ggctcgggcaagacggcctcagatcccaaggagcgcgcacgccaggctgcggctacccgc
aagatgtcgcccgaggagaaggccgagtacaagcagcaccgggccaaggatcaactgatc
cgccggatgggtatcgatccggaacatggctggaaggcgcattacgagattctgcccggc
aaggaaaaggtcgtggcagaattgcagaagcttgctgaaaaagccgatgccgtctatctc
gcgaccgaccttgatcgcgagggggaggccattgcctggcacctgaaagagaccatcggc
ggcgaggactcacgctacaagcgcgtggtcttcaatgagatcaccaagaacgccattcag
gaggccttcaccgagccgggcagcctcaacatacctcgtgtcgaggcacagcaggcacgt
cgattcctggaccgcgtggtgggcttcatgctgtcgccactgctatgggcaaagatcgcc
cgtggcctttccgcaggccgagtccaatcggtggccgtgcgcctgatcgtcgagcgcgag
cgtgaaatacgtgccttcgtgcccgaggaattctgggatgtacacgccgatctggtgtcg
agcgatggtgagcccgttcgctttgaactggttcgccaggatggcaaggcgtttcggccc
acctcggaagccgaaaccatggaacgcattgcggcgctgcgtaaggcgagcctcgccatt
accgcccgtgaggacaagcctacccgctcgaagccgaatgctcccttcatcacctcgacc
ctgcagcaggccgccagtggccgcctcggattctcggtgaagaagaccatgacactggcc
cagcgcctctacgaggcaggctacattacctatatgcgtaccgattccaccaacctgtcg
aaagatgcggttgagaacgtgcgtgagtacatcaatgcggaattcggcagccggtacttg
cctgaagcacccaatcgctactccagcaaagagggggcccaggaggcgcacgaggccatc
cgtccctcggaggtgcagcgcaaggcgggtgaactggccggcatggagcgtgatgccgag
cgcctctatgaattgatctggcgtcagttcgtggcctgccagatgacgccggcggagtat
ctctccagtaccctgaccgtggaaaccgcaggatacgagttgcgtgccaagggccgtgtg
ctcaagttcgatggctatacccgtgtcatgaagccggccgggaagaacgaagaccaggcc
ctgcccgatctgccaaccgggactcccatgagcctcgcggcgctggacccaaggcagcac
ttcaccaagccggcggctcgctataccgaggcgagcctggtcaaggaactcgagaagcgc
ggcatcggccggccctccacctacgcttcgatcatctccacgatccaggaccgcggttac
gtcaagctcgagaaccgtcgtttctatgccgaaaagcttggcgatatcgtcaccgagcgg
ctcaaggagtccttcccggacctgatggatttctcgttcacggcgcgcatggaagatggc
ctcgacgaggtggccgaaggtgagcgcaactggcaggagctgctcgatgccttctatgcg
gaattccgtgaagagctggaagcggcccagagcgaggacgggatgcggccgaatcagccg
gtccccacggatattgactgccccacctgcgggcgcaagatgcagatccgtacggcctcc
actggcgtcttcctgggctgctccggctacaacctgccgcccaaggagcgttgcaagacc
accatcgacctgctgcccggcgaggaggcggtagccgccgatgccgacgaggaagccgag
accgaggcgctgcgtgccaagcaccgttgccccaagtgcggtacggccatggacagctac
ctgatcgacgagcagcgcaagctgcatatctgcggtaacagtcccgactgtgacggctac
gaagtcgagcagggtcggttccgcatcaagggctatgacggccccaccattgagtgcgac
aagtgcggcagcgagatgcagctcaagtccggtcgcttcggcaagtactttggctgtacc
aacagcgagtgcaagaacacccgcaagttgctcaagagcggcgaagtggcaccgcccaag
atggatccgatccccatgcctgagctggcgtgtcagaaggtggaggaccactatgtcctg
cgtgacggtgccagcgggctgttcctggctgccagcaagtttcccaagaatcgggaaacg
cgtccgccgctggtgcgtgaactcaaggcgcatgccgaggcgctgcccgagaaataccac
tacctgctcgatgctcccgtcgaggatcccgatggtcgaccgagccagatccgcttctcg
cgcaagaccaaggagcagttcgtgatgaccgaggaggagggcaaggcgaccggttggaag
gccttcttcgacaacggcagatggcaggtggaggacaagcggaaatga
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