Halomonas chromatireducens: LOKO_01483
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Entry
LOKO_01483 CDS
T04292
Symbol
recB_2
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LOKO_01483 (recB_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_01483 (recB_2)
Enzymes [BR:
hco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LOKO_01483 (recB_2)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LOKO_01483 (recB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AMD00551
UniProt:
A0A0X8HDD0
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All DBs
Position
1560421..1564263
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AA seq
1280 aa
AA seq
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MSQLPLTLPLRGSQLIEASAGTGKTFTIALLYVRLVLGHGQPDSAASALDNGFPPPLVPP
DILVVTFPEAASQELRDRIRARLVQAAEAFRATSPDDGLDQRDPLLAALRDDFVQDAWAS
CARRLTLAAEWMDDAAISTIHSWCQRMLKEHAFDSGKLFRQELIKDLTEVTREAVTDYWR
TRVYPLSEPLAAAMVSLFDSPQVLQEKLRNLLQREDATLVFCGQPLEAGDFSDMLARFSQ
SREAARQHEAEARQAYRGDAEQIHETLRKLREAMNGTVFRGVKDDDTFEGWLAELTQWGR
GNIPLDQAKFVQKLASGRFKVKKGAEVPEHAFFDALEAWRLSHEDNDTLQRELLPQVLAD
AQDWVSRRLAEQLAANAQMGFNDMIRGLSEALTGDGGDGLARRIREQFPVAMIDEFQDTD
PAQYRIFERIYRVGAPAASEAASDALDLQDDAHRPTALILIGDPKQAIYGFRGGDIYTYL
SARQATLGHHHSLDTNFRSSDAAVAAVNQLFLHAEKTHERGAFRFADPALPAGQKKNESN
PLPFHKVGANGRKEILHLDGQPTRALVGWLLENAEDDGGCLNKDAYLRVASRHCANRIAG
WLNQAGENGAGFATSEKGEFTPLKAGDIAILVRDRKEAGAIRDALSERGLTSVYLSDRDS
VFGTAEARDLLRWLKAMANPESVSTLRTALATATLGLPLAELDRLQRDEAAWEQAQEQFI
GYRQRWQHRGILPALRQLLHDYRIPARLLDSDLGQRRLTNLLHLAEWAQQASDTLDGDHA
LIRLLAEHVQEPGYDEQILRLESDADLIQVVTIFKSKGLEYPVVCLPFLCTYKEVTGKFG
TPLYHQDDQPMLELAPKKEMAKEGFELADDERLSEEVRLIYVALTRARHATFVGLAPLKV
GNSKTATLHKSALGYLLAGGESLPDLAGLREKWQQLSDDCDAITLEPGESALSRYQPVTT
ETPGKSARRPGHRAFTPWWIASYSALQQKGAAAPETPEAEILGEEHAETRQAATPRDTRA
PAAETLHAFPRGPGPGTFLHGILEALANHGFAGVLEDEALLARMLQRCRRRGWEAHVPAL
GEGIKRWLTIPLAPEGQKGPVLAKLERYRAEPDFWFATAGAITPAMDKLTREYLFPGEPR
PKLGYQQLNGLLKGFIDLLAEHEGKVYVIDWKSNWLGADDDAYQETAMQAAMLDKRYDMQ
LALYLVALHRHLRQTLPDYDYDRHVGGAMLVFLRGIGAPSRGVAPIKPPKAFVEAMDRCL
AGHYDTTPERDTQLTMEGTA
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atgagccagctgccgcttacgctgcccctgcgcggcagccagctgatcgaagccagtgcc
ggcaccggcaagaccttcaccatcgccctgctctacgtgcggctggtgctgggccacggc
cagccggacagcgcggccagcgccctcgacaacggctttccccccccgctggtgccgccc
gacattctggtggtgacatttcccgaagccgccagccaagagctgcgcgaccgcattcgc
gcccgcctggtccaggccgccgaggcgtttcgcgccacatcaccggatgacggcctagac
cagcgcgacccactgctggccgccctgcgcgacgactttgtgcaggatgcctgggcgagc
tgcgcccggcgcctgacactcgcggccgaatggatggatgacgcggccatctcgaccatt
cacagctggtgtcagcgcatgctcaaggagcacgccttcgacagcggcaagctgttccgc
caggagttgatcaaggacctgaccgaagtcacccgcgaggccgtgaccgactactggcgc
acacgggtctatccgctcagcgagccgctggccgccgccatggtcagcctcttcgattcc
ccccaggtgctgcaagagaaactgcgcaacctgctgcagcgggaggacgccaccctggtc
ttctgtgggcaaccgcttgaagccggcgacttcagcgacatgctggcgcgcttcagccag
agccgcgaggcggctcgccagcatgaggccgaggctcgacaggcctatcggggcgatgcc
gagcagatccatgagacgctccgcaagctccgcgaggccatgaatggcacggtgttcagg
ggcgtcaaggacgacgacaccttcgaaggctggctcgctgaactcacccagtggggacga
ggtaacattcccctcgaccaggcgaaattcgtgcagaaactcgccagcgggcgcttcaag
gtcaagaagggcgccgaagttcccgagcacgcgtttttcgatgccttggaagcgtggcgc
ctcagccatgaagacaacgacaccctccagcgcgagctgctcccccaggtgctggccgat
gcccaagactgggtcagccggcgcctggccgagcagctagcggccaatgcccagatgggc
ttcaacgacatgattcgcgggctttccgaggcattgaccggagatggcggtgacggcctg
gctcgccgcatccgcgagcagttcccggtcgccatgatcgacgagttccaggataccgac
ccggcccagtaccgcatcttcgagcgcatctaccgggtgggcgcaccggccgcctcggag
gcagccagcgatgccctcgatctccaggatgacgcccacaggcccacggcactgatcctg
atcggggaccccaagcaggccatctacggctttcgcggcggcgatatctacacctacctc
tcagcgcgccaggccaccctgggccaccaccacagcctggataccaacttccgttccagc
gacgcggccgtagcggccgtcaaccagctgttcctgcatgcggaaaagacccatgagcgc
ggcgctttccgctttgccgacccggcgctgccggcgggccagaaaaagaatgagagtaat
cccttgcccttccacaaggtcggggccaatgggcgcaaggagatcctgcaccttgatggc
cagccgaccagggcgctggtgggctggctgctggagaatgccgaggatgacggcggctgc
ctgaacaaggacgcctacctgcgcgtggcgtcgcgccactgcgccaaccgcattgccggc
tggctcaatcaggccggcgagaacggtgccggtttcgccacctcggaaaagggcgagttc
acgccgctcaaggccggtgatatcgccattctggtgcgcgatcgcaaggaggcgggcgcc
attcgcgacgccctcagcgagcgcggcctgaccagcgtctatctctccgaccgcgacagc
gtcttcggcaccgccgaggcccgcgacctgctccgctggctgaaggccatggcaaacccc
gagtctgtctcgaccctgcgcacggcactggcgaccgccacccttgggcttccgctcgcc
gagctggatcggctgcagcgggatgaggccgcctgggaacaggctcaggagcagttcatc
ggctatcgccagcgctggcagcatcgtggcatcctccccgccctgcgccagctgctgcac
gactaccggattccggcgcggctgcttgacagcgacctgggtcagcgtcggctcaccaac
ctgctgcatctggccgagtgggcccagcaggccagcgacaccctggacggcgaccacgcg
ctgattcgcctgctcgccgagcatgtgcaggagcccggctatgatgagcagatcctgcgg
ctggagagcgacgccgaccttattcaggtggtcacgatcttcaaatccaaggggctggag
tacccggtggtctgcctgccgtttctatgtacctacaaggaggtcactggcaagttcggc
acaccgctctatcaccaggatgaccagccgatgctggagctggcccccaagaaggagatg
gccaaggaaggctttgaactggccgatgacgagcgcctctcggaagaggtgcgtctgatc
tatgtggcgctgacccgcgcccgccacgccaccttcgtgggactggcgccgctcaaggtg
ggcaacagcaagacggccaccctgcacaagtcggcgctgggctatctgttggccggggga
gaaagcctcccggatctggcgggcctgcgcgagaagtggcagcagctcagcgacgactgt
gatgccatcaccctggagcccggcgaaagcgcgctgtctcgctaccagcccgtcactacc
gaaacacccggcaagtcagcacgccggcccggtcaccgcgcctttaccccctggtggatc
gccagctactcggcactccagcagaaaggagcggccgcccccgagacccccgaagccgag
atccttggcgaagagcatgccgagactcgccaggccgctacaccccgggacacccgggcg
ccggcggccgagacgctgcacgccttcccccgcggccccgggcccggcaccttcctccac
ggcatcttggaagccctggccaaccacggctttgcaggcgtgcttgaggacgaagcgctg
ctggcgcgcatgctccagcgctgccgtcgacgcggctgggaagcgcatgtgccggcactg
ggagaaggcatcaagcgctggctgaccatcccgctggcccccgagggccagaaggggcca
gtgctggccaagcttgagcgctaccgcgctgagcccgacttctggtttgccaccgcgggc
gccatcaccccggcgatggacaagctgacccgggagtatctcttccccggtgagccgcgc
cccaagctgggctaccagcaactcaacggcctgctcaaggggttcattgatctgttggcc
gagcatgaagggaaggtctatgtcatcgactggaagtccaactggctgggcgcggatgat
gacgcctatcaggagacagccatgcaagcggccatgctcgacaagcgctacgacatgcag
ctggcgctctacctagtggcgcttcaccgccacctgcgccaaaccttgcccgactacgac
tacgaccgccacgtgggcggtgccatgctggtgtttctgcgtggcatcggcgcgccctct
cgcggcgtagctccgatcaaacctcccaaggcgttcgtcgaagccatggaccgctgcctg
gccggccactacgacactacgcccgagcgtgatactcagctcaccatggagggaaccgca
tga
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