Halomonas chromatireducens: LOKO_01484
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Entry
LOKO_01484 CDS
T04292
Symbol
recD_2
Name
(GenBank) RecBCD enzyme subunit RecD
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03030
DNA replication
hco03430
Mismatch repair
hco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LOKO_01484 (recD_2)
03430 Mismatch repair
LOKO_01484 (recD_2)
03440 Homologous recombination
LOKO_01484 (recD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hco03032
]
LOKO_01484 (recD_2)
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_01484 (recD_2)
Enzymes [BR:
hco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LOKO_01484 (recD_2)
DNA replication proteins [BR:
hco03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LOKO_01484 (recD_2)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LOKO_01484 (recD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
RecD_N
AAA_30
RNase_T
AAA_11
NAT10_TcmA_helicase
AAA_22
AAA_16
UvrD-helicase
AAA_28
DNA_pol_A_exo1
Rv2179c-like
NTPase_1
SLFN-g3_helicase
nSTAND3
T2SSE
Motif
Other DBs
NCBI-ProteinID:
AMD00552
UniProt:
A0A0X8HDC8
LinkDB
All DBs
Position
1564260..1566428
Genome browser
AA seq
722 aa
AA seq
DB search
MSETSLTSPNTAWPSSEQALADREALLALLFAWAELGWIRDLDAALAHRLAQLAPEGDAS
CLLAAMLVSHQAGQGHLLVDLTQAHEQPTTLIAVEPGDDAPPTPEALLSLLAPARWSQAL
RGWSAVGSGPGNSPLVLEGERLYLRRYWRNEQQVANGVDTRLALGEVVDAATLRPVLDVL
FPPASHSAEQAGSQKLACALGARAPFTVITGGPGTGKTTTVIRLLALLQVQAIATRGAPL
AIRLAAPTGKAAARLSESIRDQIDALEGLDLPHAEQVRDAIPHEVLTLHRLLGARPDTRH
FRYHRLNPLPLDMVAVDEASMVDIDMMAALLDALPPHARLVLLGDKDQLASVEAGAVLGN
LCARAEAGHYREEVTQWLESATGVPAWFKGDAPALLVLLESLLERLREHAGTTSFEGEML
LGNRRVYLDLIWPGKPLSQRELTTWSDQRLAALPLSPRVGDLLRQHASDAWSLADSDGKY
ARLRLPLPAVERVGAPRTLAAPRPEFHDFGIADLPPPDAELARRPLRALEIVAFDTETTG
LELRRGDTVISIGACRIVNARLLASDVFDVRVDPGKPIPPASTAIHGLTDSDVSGAPPLP
VLLPRFRNYIGDAVVLAHNAAFDLLALQPPGASVTLDMPVLDTLLISRALDESLDGHDLD
TLADRYSLRFPPGTRHTALGDARVTAELWLALLPRLEARGIETLEQALALQASAFDKEDA
CT
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgagcgagacctcgctgacttcccccaacacggcctggccctcgtctgaacaggcccta
gcggatcgcgaagcgctgctggcgctgctgtttgcctgggctgagcttggctggatccgt
gacctggatgctgctctggcccaccgcctggcacagttggcacccgaaggagatgccagc
tgcctgctggcagccatgctggtcagtcatcaggccggccagggccacctgcttgtggat
ctgacacaggcccatgagcagcccaccacgctgatagcggtggagccaggtgacgacgca
ccgccgacgccggaagccctgctgagcctgctggcgcctgctcgctggagccaagccttg
cgcggctggtcggcggtcggcagcggcccgggcaacagcccgctagtgctggaaggggag
cgcctctatttgcgccgctactggcgtaatgagcagcaggtggcgaacggcgtcgatacc
cggctggcgctcggcgaggttgttgacgccgctaccctgcgtccggtgctggacgtcctg
tttcccccggccagccactctgccgaacaagccggttcacagaaactcgcctgtgcgctg
ggggcacgcgcgcccttcacggtgatcaccggcggccccggcaccggcaagaccactacc
gtgattcgcttgctggcactgctgcaggtgcaggccatcgccacccgaggcgcaccgctg
gctattcggctggcggcgcccaccggcaaggcggccgcacgcctgagcgagtcgatccgc
gaccagatcgacgccctggaagggctggacctgccccacgcagagcaggtgcgtgatgcc
attccccacgaggtcttgacgctgcaccgcctgctgggcgcccgaccggatactcgccac
ttccgctatcatcggctcaacccgctgccgctggacatggtcgcggtggacgaagcctcg
atggtggatatcgacatgatggcggccctgctcgacgccctgccgccccatgcccgcctg
gtgctgctgggggacaaggaccagctggcctcggtggaggccggcgcagtactgggtaac
ctttgtgcccgcgcagaagcagggcactatcgcgaggaggtcacccaatggctggaaagc
gccaccggcgtgcctgcctggttcaagggcgacgctcccgcgctgctggtgcttctggag
tcgctgctggagcgactacgggagcatgccggcaccacctccttcgaaggggagatgctg
ctcggcaatcggcgtgtctatctcgacctcatctggcccggaaagccgctttcccaacgc
gagctgaccacctggagcgatcagcgtctggccgccctgccgctgtcgccccgtgtcggc
gacctgctgcgccagcacgccagcgatgcctggagcctggccgacagtgacggcaagtac
gccaggctgcgcttgccgctgcccgccgtggaaagagtcggcgccccccgcacgctggcg
gctccccgcccggaattccacgacttcggcattgccgacctgccaccgcccgatgccgaa
ctcgcccgccggcccctgcgtgccctggagatcgtggccttcgataccgaaaccacgggc
ctggaactgcgccgcggcgatacggtcatcagcatcggcgcctgccgcatcgtcaatgcc
cggctgctggccagcgacgtcttcgacgttcgggtcgaccccggcaagccgattcccccg
gccagcacggccatccacggcctcaccgatagtgacgtcagcggcgcgcctcctctgccc
gtcctgctgccacgttttcgcaactatatcggcgacgcggtggtactggctcacaacgcc
gccttcgacctgctcgccttgcagcccccgggggccagtgtcaccctggatatgccagtg
ctggacaccctgctcatatcgcgtgcgctggacgagagtcttgacggccatgacctggac
acccttgccgaccgttacagcctcaggtttccccccggaacgcgacataccgcactgggc
gatgcccgggtcacggctgagctgtggctggcgctgctgccgcggctcgaggcgagaggc
atcgagaccctggagcaggcgcttgcccttcaggccagcgccttcgacaaggaggatgcc
tgcacatga
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