Halomonas chromatireducens: LOKO_01806
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Entry
LOKO_01806 CDS
T04292
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKO_01806 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_01806 (deaD)
03009 Ribosome biogenesis [BR:
hco03009
]
LOKO_01806 (deaD)
Enzymes [BR:
hco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LOKO_01806 (deaD)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LOKO_01806 (deaD)
Ribosome biogenesis [BR:
hco03009
]
Prokaryotic type
rRNA helicases
LOKO_01806 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DeaD_dimer
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AMD00874
UniProt:
A0A125R034
LinkDB
All DBs
Position
1919491..1921194
Genome browser
AA seq
567 aa
AA seq
DB search
MTSTSVASPSFGDLALLPAVLSAVETLGYETPSPIQLQTIPALLEGRDMLGQAQTGTGKT
AAFALPILSRLELTRREPQVLVMAPTRELAQQVAVSFSKYGQNLKGLEVATLCGGQEYRE
QLGALKRGAQVVVGTPGRIIDHLDRGSLKLDGLSALVLDEADEMLRMGFIDDVKRVVADT
PKDAQRVFFSATLPTEIERIVNRYLVDPVKVVIEASVGTAASIDQRLVRVEGGAKLEALS
RILEVEPVDGAIVFVRTRAACTTLMEQLSARGVNVASLSGDLDQSLRERTITRLKRGKVD
VLIATDVAARGLDVSRITHVINYDLPQDSEAYTHRIGRTGRAGRTGIAITFVGSREMRKV
RWMEQATGQHMADMPIPDEAAIRAHRDNAFFLRTQGALTAGAEEQRALIERLVAEGHDPV
ELACAFAAMARADEAPIGRMQPPRKERTERDPRDGKPARRERGPSEGMTRYRVAVGHKDG
VKPGQLVGALANEGGIEGARIGRIDIRNAFSVVELPSSLPASILEKMARARVAGRPLEIS
EDAGATAERAPRRRQDGDAPIRRRNTA
NT seq
1704 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgacttctgtcgcttcgccgagcttcggcgatcttgctctgttgcctgccgtt
ctctccgctgtggaaacactgggctacgagactccttccccgatccagctgcagaccatt
cctgcactgctggaagggcgtgacatgctgggccaggcccagaccggcaccggcaagacc
gctgcctttgcactgccgattctgtcccgcctggagctgactcgccgtgagcctcaggtg
ctggtaatggcgccgacccgcgagctggctcagcaggtagccgtgtcgttcagcaagtac
ggccagaacctcaagggcctggaagtcgccaccctgtgtggcggccaggaataccgtgag
cagctgggtgccctgaagcgtggcgcccaagtggtggtcggcacccccggccgcatcatc
gaccacctggatcgcggtagcctcaagctcgacggcctctctgccctggtgctcgacgaa
gccgacgagatgctgcgcatgggcttcatcgacgacgtcaagcgtgtggtcgccgatacg
cccaaagatgcccagcgggtcttcttctcggcaacgcttccgaccgagatcgagcgcatc
gtcaatcgctacctggtcgatccggtcaaggtcgtgatcgaagccagcgtgggcactgct
gccagcatcgaccagcgtctggtacgcgtcgaaggtggcgccaagctggaagcgctgtcg
cgcatcctcgaagtcgagccggtcgatggcgccatcgtcttcgtgcggacccgtgctgcc
tgtaccacgctgatggagcaactctctgcccgcggcgtgaacgtggcgagcctttccggt
gacctggaccagagcctgcgcgagcgcaccatcacccgtctcaagcgcggcaaggtcgat
gtgctgatcgccaccgacgtggccgcccgcggcctcgacgtgtcgcgtatcacccacgtc
atcaactatgacctgccccaggacagcgaagcctatacccaccgtatcggtcgtaccggc
cgtgcgggccgtaccggcatcgcgatcaccttcgtcggatcgcgcgaaatgcgcaaggtg
cgctggatggagcaggccaccggtcagcacatggctgatatgccgattcccgacgaagcc
gccattcgcgcccatcgggataatgccttcttcctgcgtacccagggcgccctgactgcc
ggtgccgaggagcagcgtgcgctgatcgagcgcctggtcgctgaagggcatgaccccgtc
gagctagcctgtgccttcgccgcgatggctcgcgccgacgaagcgcccatcggccgcatg
cagccgccgcgcaaggagcgtaccgagcgcgatccgcgtgacggcaagccggcgcgccgc
gagcgtggccccagcgaaggcatgacccgctaccgtgtcgccgtgggtcacaaggatggg
gtcaagccgggccaactggtcggtgccctggccaatgaagggggcatcgaaggtgcccgc
atcggtcgcatcgacattcgcaacgccttctccgtggtggagttgccgagctcgctgccg
gccagcatcctcgagaagatggcccgtgcccgtgtcgccggtcgcccgctggaaatcagt
gaagacgccggtgccactgccgagcgcgccccgcgtcgccgccaggatggggatgccccg
attcggcgtcgcaacacggcgtaa
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