Halomonas chromatireducens: LOKO_02079
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Entry
LOKO_02079 CDS
T04292
Symbol
rnc
Name
(GenBank) Ribonuclease 3
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
LOKO_02079 (rnc)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_02079 (rnc)
03009 Ribosome biogenesis [BR:
hco03009
]
LOKO_02079 (rnc)
03036 Chromosome and associated proteins [BR:
hco03036
]
LOKO_02079 (rnc)
Enzymes [BR:
hco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
LOKO_02079 (rnc)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOKO_02079 (rnc)
Ribosome biogenesis [BR:
hco03009
]
Eukaryotic type
90S particles
RNase
LOKO_02079 (rnc)
Prokaryotic type
rRNA processing factors
LOKO_02079 (rnc)
Chromosome and associated proteins [BR:
hco03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
LOKO_02079 (rnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
RM44_endonuclase
DSRM_2
DND1_DSRM
Motif
Other DBs
NCBI-ProteinID:
AMD01145
UniProt:
A0A0X8HEP0
LinkDB
All DBs
Position
complement(2210768..2211460)
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AA seq
230 aa
AA seq
DB search
MSNSLNAFSRRIGHTFRDDALLELAMTHRSFGGQNNERLEFLGDSIVNFVIAEALYQRFP
QAREGQLSRLRARLVRGQTLAELAREMSFGECLRLGSGEMKSGGHRRDSILADAVEAVLG
AIYLDAGMDVARTRVLAWYAERLEAIDLQDTQKDPKTRLQEFLQSRQVPLPRYEVVSVEG
EAHDQTFTVECHIELLNEHTLGIGASRRHAEQQAAEMALSQIETLGGRGK
NT seq
693 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaactccctcaacgccttcagccgacgcatcggtcacaccttcagggatgacgcc
ctgttggagctggccatgactcatcgcagcttcggcggccagaataacgaacgactcgag
tttctcggtgactccatcgtcaatttcgtgatcgccgaagcgctctaccagcgttttccc
caagcgcgggaaggccagctatcacggctgcgtgccaggctggtacgtggtcagacgctg
gctgaactggcccgggagatgtccttcggcgagtgcctgcgactcggctccggtgaaatg
aagagcggcggtcatcgccgtgactccatcctcgccgatgccgtcgaggccgtgcttggc
gccatctacctggatgccggaatggatgtggcacggacccgggtgctggcctggtacgcc
gaacgcctggaggccatcgacctgcaggacacccagaaggaccccaagacacggctccag
gagtttctgcagtcgcgccaggtacccttgcctcgctatgaagtggtatcggtggaaggg
gaggcgcatgaccagacttttaccgtggagtgtcatatcgaactgctaaacgaacacacc
ctgggaattggagccagccggcgtcatgctgaacagcaggcggcggagatggcgttgtct
cagatcgagaccctgggagggcgtggtaaatga
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