KEGG   Halomonas chromatireducens: LOKO_02088
Entry
LOKO_02088        CDS       T04292                                 
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
  KO
K03732  ATP-dependent RNA helicase RhlB [EC:5.6.2.7]
Organism
hco  Halomonas chromatireducens
Pathway
hco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOKO_02088 (rhlB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hco03019]
    LOKO_02088 (rhlB)
Enzymes [BR:hco01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LOKO_02088 (rhlB)
Messenger RNA biogenesis [BR:hco03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LOKO_02088 (rhlB)
SSDB
Motif
Pfam: Helicase_C DEAD Utp25_C ERCC3_RAD25_C
Other DBs
NCBI-ProteinID: AMD01153
UniProt: A0A0X8HEG4
LinkDB
Position
complement(2222297..2223067)
AA seq 256 aa
MVRLQRHQRRRCPPDHEKRDVDLTQVEVLVLDEADRMLSMGFIPDVKRIIRHTPKKEERQ
TFLFSATFSQDILNLASQWTHEPAHVEIEVTVENAANIDQRVYMVSDDDKQRLLVNLLRQ
ESFDRVMVFGNRRDLVRKLDELLRKAGINAAMLSGDVPQNQRIKTLESFREGEIQVLVAT
DVAGRGIHIEDVSHVINYTLPEDPEDYVHRIGRTGRAGANGVSISFVGEEDAFSLPEIER
YINGKLPCVHPPEGLL
NT seq 771 nt   +upstreamnt  +downstreamnt
gtggtcaggcttcagcgtcatcagaggagaagatgtccaccagatcacgagaagcgcgac
gtcgacctgactcaggtcgaggtgctggtgctcgacgaggcggaccgcatgctgtcgatg
ggcttcattcccgacgtcaagcgaatcatccggcatacgccgaagaaagaggagcgccag
accttcctgttctcggcgacgttctcccaggacatcctcaatctggccagccaatggacc
catgagcccgcacacgtcgagatcgaggtcacggtggagaacgccgccaacatcgatcag
cgggtctacatggtcagcgacgatgacaagcagcgcctgctggtcaacctgttgcgtcag
gagagcttcgaccgggtgatggtgttcggcaatcgtcgtgatctggtgcgcaagctcgac
gaactgctcaggaaggcgggcatcaatgcggcgatgctctccggtgacgtgccccagaat
cagcgcatcaagacgctggagagcttccgcgaaggggagatccaggtgctggtggccacc
gacgtggcgggccgcggcatccatatcgaggatgtcagtcacgtgatcaactacaccctg
ccggaagacccggaagactatgtgcatcgcatcggccgtaccggccgcgctggcgccaac
ggggtgtcgatcagtttcgtcggcgaagaggatgccttctcgctgcccgagatcgagcgc
tacatcaacggcaaattgccctgcgtgcatccgcccgaggggctgctgtaa

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