Halomonas chromatireducens: LOKO_02230
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Entry
LOKO_02230 CDS
T04292
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKO_02230 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_02230 (rnr)
03016 Transfer RNA biogenesis [BR:
hco03016
]
LOKO_02230 (rnr)
Enzymes [BR:
hco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LOKO_02230 (rnr)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOKO_02230 (rnr)
Transfer RNA biogenesis [BR:
hco03016
]
Prokaryotic type
tRNA degradation factors
LOKO_02230 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
AMD01293
UniProt:
A0A0X8HER3
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All DBs
Position
complement(2362682..2365102)
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AA seq
806 aa
AA seq
DB search
MTHWTLSDDPHASREAHKYDKPAPSREYLLSRMEEHGKPVSHENMSRMLGLDDEELQEAV
RRRLAAMERDGQVLRNRAGAYALIDKLDLIKGKVLGHRDGFGFLLRDDGKKPDLVLPPRQ
MRRVFHGDAVLARVSGRDRRGRDEATIAEVLSRNTQTIVGVYRANTSEFGVLIPENPRIT
QEVIIPHSACGGAKDGQVISAKIVQQPETRVQPVGEVVEVLGERMDPGMEIDIAIRSYEI
PSEFPPDVQDEIAGMSAEVVDADKQHRIDLRDVPFVTIDDESAKDFDDAVCAWKTKSGSW
KLLVAIADVSHYVRPGSALDEEAITRGNSVYFPGQVVPMLPELLSNGLCSLNPSVDRLAL
VCEMNISQSGAISRYRFYEAVFQSHARLTYNKVAAILDEESAEGDALREEYRALVPSLQN
LHSLYRLLREARVARGAIDFETTETAILFNEERKIEKIVPRSRNDAHKIIEECMLAANVA
TARFLDKHDLPALYRIHEKPSPERLDKLRLFLNELGLSLGGGDDPSPEDYRDLAEVIKDR
PDSDVIQTVMLRSMSRAVYSPHNEGHFGLAYPAYAHFTSPIRRYPDLLVHRAIRSVIRGP
RQTATVLRAEGGKVEPPSKWCPYTFEQMLELGEHCSMTERRADDATRDVEDWLKCEFMSD
KLGEVYEGTIASVTQFGIFVRLDEVYVEGLVHVTSLPSDYYHYEPEKHRLKGERTGMSYR
LGDGVTVQVARVDLDDRKIDFALEDEKPRPKRQPRKRRGAGESSNATPPAAGSGKGDAKV
GKDDAKGGKGKGGKRRRGPRKPKARS
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgacccactggacgctcagcgacgacccgcacgccagccgcgaggcccataagtacgac
aagcccgcccccagccgcgaatacctgctgtctagaatggaagagcacggcaagccggtt
tcccatgagaacatgagccgtatgctgggcctcgacgacgaggagctccaggaggcggtg
cgccgtcggcttgcggccatggagcgtgacggccaggtgctgcgcaaccgcgccggtgcc
tacgcgttgatcgacaagctggacctgatcaagggcaaggtgcttggccatcgcgatgga
ttcggcttcctgcttcgtgacgatggcaagaagcctgacctggtcctgccgccacgccag
atgcgccgtgtcttccatggcgatgccgtgctggccagggtcagcggtcgcgaccggcga
ggacgcgacgaggcgacgatagccgaggtgctgtcccgtaatacgcagaccatcgtcggc
gtctaccgcgccaatacttccgagttcggcgtgctgattccggagaatccgcgcattacc
caggaagtgatcattccccatagtgcctgtggcggcgccaaggatggacaggtgatttcg
gcaaagatcgtccagcagccggagacccgggtgcagccggtcggtgaggtggtcgaggtg
ctcggcgagcgcatggatccggggatggagatcgatatcgccattcgtagctacgagatc
ccctcggagttcccgccggatgtacaggatgagatcgccgggatgtcggccgaggtggtg
gatgccgacaagcagcatcgcatcgatctgcgcgatgttcctttcgtcaccatcgacgat
gagtcggccaaggatttcgacgatgccgtctgtgcctggaagacgaagtcgggcagttgg
aagctgctggtggccattgccgacgtctcgcactatgtgagacccggcagcgccctcgac
gaggaggcgatcacccgcggcaattcggtctatttccccggccaggtcgtgcccatgctg
ccggagctgctctccaacgggctctgctcgctgaaccccagcgtcgaccgactggcgctg
gtctgcgagatgaatatctcccagtccggtgccatcagtcgctatcgcttctacgaggcg
gtattccagtcgcatgcgcggctgacctataacaaggtcgccgccatcctcgacgaggag
agcgcggagggggatgcgctgcgcgaggagtatcgcgccctggtgccttcgctgcagaac
ctgcattcgctctatcggctgctgcgcgaggcccgcgtggcccgtggcgccatcgatttc
gagaccaccgagacggcgattctcttcaacgaggagcgcaagatcgagaagatcgtgccg
cgctcgcgcaacgatgcccacaagatcatcgaggagtgcatgctggcggccaacgtggcc
accgcccgcttcctcgacaagcacgatctgccggcgttgtatcgtatccacgagaagccc
tcgccggagcgcctggataagctgcgcctgttcctcaacgagctggggctgtcgctgggc
ggtggtgacgacccgagcccggaggattatcgtgacctggccgaggtgatcaaggatcgt
cccgattccgacgtgatccagaccgtgatgctgcgctccatgagccgggcggtctattcg
ccgcacaatgaaggccactttggcctggcctatccggcctatgcccacttcacatcgccg
atccgccgctatcccgacctgctggtacaccgggccatccgctctgtcattcgtgggccg
cgccagaccgccacggtgctgcgtgctgaaggcggcaaggtggagccgcccagcaagtgg
tgtccctataccttcgagcagatgctcgagctgggggaacactgctccatgaccgagcgt
cgcgccgatgacgccacccgggacgtcgaggactggctgaagtgcgagttcatgtccgac
aagctcggcgaggtctacgagggcaccatcgcctcggtaacccagttcggcatcttcgta
cgcctcgatgaggtctatgtggaagggctggtgcatgtcacatcgctgccctcggactat
taccactacgaaccggaaaagcaccgcctcaagggcgagcgtaccggcatgagctaccgt
ctgggcgacggtgtcaccgttcaggtggcgcgtgtcgaccttgatgaccgcaagatcgat
tttgccctggaggacgagaagccgcgccccaagcgacagcctcgcaaacgccgaggtgcc
ggcgagtcgagcaacgccacgccgccggcggccggcagtggtaaaggtgatgccaaggtc
ggcaaggatgatgccaagggcggcaagggcaagggcggcaagcgtcgtcgcggcccgcgc
aagcccaaggcacgcagctga
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