Halomonas chromatireducens: LOKO_02410
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Entry
LOKO_02410 CDS
T04292
Symbol
sbcC
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
hco
Halomonas chromatireducens
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_02410 (sbcC)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LOKO_02410 (sbcC)
Archaeal homologous recombinant proteins
LOKO_02410 (sbcC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
AAA_21
ABC_tran
ABC_ATPase
AAA_22
nSTAND3
RsgA_GTPase
AAA_15
cobW
Zf-C2H2_ZNF451_5th
Motif
Other DBs
NCBI-ProteinID:
AMD01470
UniProt:
A0A0X8HF39
LinkDB
All DBs
Position
2552897..2556199
Genome browser
AA seq
1100 aa
AA seq
DB search
MKILAIRLENLASLAGNHELDFTQPPLADAGLFAITGPTGAGKSTLLDALCLGLYGNTPR
LRGARQDQARLPDVGDSDVTSFDPRTLLRRGAAGGHAEVDFLGRDGHRYRARWAVRRARD
KAEGRLQAAEQSLTNLEDGRLLTAQKREFDRLLPEVLGLSFEQFTRAVLLAQSEFSAFLK
ADDNDRSDLLERLTGTTEYSAISMAAYRRAKEAKGVVDALLARLNDDLPAAPDVRAELER
DSETTQQALTHLQRQAESLKAQQRWHSDDAHLKAAHVEGLDQQQVADTHWQALAEQRADR
HWRRLMAPRRQDLSRQARLPGLIAEAEHARHTTRQALARAQQEAQDASGIHRQAALALEA
ANEARRKAEPDLNQAREQHHALNQRRRELAELTAECERAREQAARYREQHRQEHERQQQR
LEQQRQWQATPAELMGSHTYQPAARQAIQQAHDSAASRQLALGELQGVWREYHEAERAHR
QRETRLAEAHERLEALTREGQAARQRLEERKSRHDNLSAFIERARAARSDSVVMLREGLQ
EGEPCSVCGGRDHPWRQHPPATPEAAQLAAQQAAEEHELDDARQKCEQALNAHQELQAQY
KVVRDTLQQHQNEQPAGQARLQAARQALDAHPLTEELTPVAADERDAWLSRQRQSSSNER
NTHQATLERLHRAEAELAPLEESLRQGELALTRLTTEKTNAEARLAELDARRPALQRQHD
ETAAALRTLLGDYATPEAWQQRLDHTETQARQALDAALSRQHAAERELQRLSQRLDHQEQ
QLGTLQQESDQLVRSLSEWRQAHPELDDATLARLLAQPQEEAERDEARLQAADEASQRAA
ATLAERRSALLRHRRAQGLADDENDDELLGEACEARIARRHDDLAAEREALEPGLQEAQR
RRDDAVHALRDDERRRARQQAGQAELEAARTEHHRWGRISELIGSADGKAFRRIAQAYNL
ELLLDHANAHLANLAPRYRMARGGSPLGMLVIDHDMGDEQRSAHSLSGGETFLVSLALAL
GLASMASGNLVIESLFIDEGFGSLDPQSLALAMDALDGLQAQGRRVGVISHIQEMHERIP
VQIKVEPLGNGASRARLVSA
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgaagatccttgccattcgcctcgagaacctcgcctccctggccggcaaccacgagctg
gattttacccagccgccgctggccgacgccggcctcttcgccatcaccggccccaccggc
gccggcaagagcaccctgctcgacgccctctgcctggggctctacggcaacaccccgcgg
ctgcgcggggcacgccaggatcaggcgcgcctgccagacgtcggcgacagcgacgtgacc
agcttcgatccgcggacattgctgcgccgcggtgcggctggcggccacgccgaggtcgat
ttcctcggccgcgacgggcatcgctaccgggcacgctgggcggtgcggcgggcacgcgac
aaggccgaaggccgcctgcaggccgccgagcaatcactcactaaccttgaggacgggcgt
cttctcaccgcccagaagcgggagttcgaccgcctcctgcccgaggtgctggggctcagc
ttcgagcagttcacccgtgccgtgctgctggcccagagcgagttttccgccttcctcaag
gccgacgacaacgaccgcagcgacctgctggagcgactgaccggcaccaccgaatactcc
gccatctccatggccgcctatcgtcgtgccaaggaggcgaagggcgtcgtcgatgccctg
ctggccaggctgaacgacgatctgcccgcggcccctgacgtaagagccgagctggaacgc
gactccgagaccacccagcaagccctcactcacctgcaaaggcaggcggagtcgctcaag
gcacagcagcgctggcacagcgacgacgcccacctcaaggcggcccatgtcgagggattg
gaccagcagcaggtagccgacacccattggcaagcgctggctgagcagcgtgccgaccgc
cactggcgccgcctgatggctccccgccgccaggacctctcccgtcaggcccgcctgccc
gggctgatcgccgaggcagagcatgcccgccacaccacccgccaggcgctggctcgggcc
cagcaggaggcgcaggacgctagcggcatccaccgccaggccgccctggccctggaggcg
gccaacgaagcgcgccgcaaggccgaacccgacctgaaccaggctcgtgaacagcaccac
gccctgaaccagcggcggcgcgaactggctgagctgactgccgaatgcgagcgtgctcgg
gagcaggctgctcggtaccgcgagcagcatcgccaggagcacgaaaggcagcagcagcgg
ctcgagcagcagcgccagtggcaggccaccccggccgaattgatggggagtcacacctac
cagcctgccgcccgccaggccattcagcaggcccacgacagtgccgccagccgccagctg
gccctgggcgaactgcagggcgtctggcgcgagtatcacgaggccgagcgcgctcatcgg
cagcgcgaaacgcgtctcgccgaagcccatgaacgcctggaggcgctgacccgggagggg
caggccgcccgccagcgcctggaagagcgaaagtcacgccacgacaacttgagcgccttt
atcgaacgggcccgggccgcccggagcgacagtgtggtgatgctccgcgaaggcctgcag
gaaggcgagccctgttcggtatgcggcgggcgcgaccatccctggcgccagcatcccccg
gccacccccgaggcggcccagctcgccgcccaacaggcggcagaggagcacgagctcgat
gacgcccggcagaagtgcgagcaggcactgaatgcccatcaggagctgcaagcgcagtac
aaggtggtgcgggataccctgcagcagcaccagaacgagcagccggcaggccaggcgcgt
ctgcaggcggctcgccaggcactcgatgcccacccgttgacggaggaactgacccccgtg
gcggcggacgagcgtgacgcctggctgagccggcagcgccagagcagcagcaacgagcgc
aatacccaccaggccaccctagaacggctccaccgcgccgaggccgaactggcaccgctg
gaggagtcgctgcgccagggtgagctggcgctgacgcgcctgacgaccgagaagaccaac
gccgaggcacggctggccgagctggacgcacgccgccccgccctgcagcgccagcatgac
gagaccgccgccgccctgcgcaccctgctcggcgactacgccacgccggaggcctggcag
caacgactcgaccacaccgagacccaggcccgtcaggccctggatgccgccttaagccgc
caacatgctgctgaacgagagctgcaacgcctgtctcagcgactcgaccaccaagagcag
cagctcggcaccttgcagcaagagagcgaccagctcgtccgctcactcagcgagtggcgc
caggcgcaccccgagctggacgatgccaccctcgcccgcctgctggcccagcctcaggag
gaagccgaacgcgacgaagcccggctgcaggcggcggacgaggccagccagcgcgccgcc
gccaccctggccgaacgccgctccgccctgcttcgccaccgccgtgcccaggggctggcc
gatgacgaaaacgacgatgagctactgggcgaagcgtgcgaagcgaggatcgccaggcgc
catgacgacctggccgctgaacgggaagcccttgagcccggactgcaggaggcccaacga
aggcgggacgacgcggttcacgccctgcgcgacgacgagcgccgccgggcacgccaacag
gccggccaggccgaactggaagcggcgcgcaccgagcatcaccgctgggggcgcatcagc
gaactgatcggttccgccgacggcaaggccttccgccgcatcgcccaggcctacaacctg
gaactgctgctcgaccacgccaacgcccacctggccaacctcgccccacgctatcgcatg
gcccggggcggcagcccgctgggaatgctggtcatcgatcatgacatgggcgacgagcag
cgctccgcgcactccctctccggcggcgaaaccttcctcgtctccctggcactggccctg
ggtctggcgtcgatggcctcgggcaacctggtgatcgagtcgctgttcatcgacgaaggc
ttcggcagcctcgacccgcagtcgctggcactggccatggacgccctcgacggcctgcag
gcccagggacgacgcgtcggcgtgatctcgcatatccaggagatgcatgaacgcataccg
gtgcagatcaaggtggaaccgctggggaacggcgccagccgggcaagactggtgagtgct
tga
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