Halomonas chromatireducens: LOKO_02598
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Entry
LOKO_02598 CDS
T04292
Symbol
hrpB_2
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hco
Halomonas chromatireducens
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_02598 (hrpB_2)
Enzymes [BR:
hco01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LOKO_02598 (hrpB_2)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LOKO_02598 (hrpB_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
nSTAND3
AAA_19
AAA_25
T2SSE
NACHT
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
AMD01658
UniProt:
A0A125R0C0
LinkDB
All DBs
Position
complement(2765056..2769075)
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AA seq
1339 aa
AA seq
DB search
MTTAIRPDSSATSPEHDELDRLYQALDAVMLRDRAGLLRRLDGLARRLKEGKPVDRGLAE
AGRAVVRSSTLVAQREAMPVTLAYPDTLPVVERRDDILAALREHQVVVVAGETGSGKTTQ
LPKLCLELGLGRRGLVGHTQPRRLAARSVATRLAEEMAVPLGGQVGYQVRFTDETGDDTL
IKLMTDGILLAETRHDPDLSRYEAIIIDEAHERSLNIDFLLGYLKRLLARRPDLKVIITS
ATIDVERFAAHFALPSEDGEPRPASVVEVSGRTYPVEVRYRPLVRDADDEADRTLQEGIL
HAVEEIEAVEREKRWFHGPRDILIFLPGEREIREAADTLRRADLKGTEILPLYARLSNAE
QNRVFAAHAGRRIVLATNVAETSLTVPGIRYVIDPGLVRISRYSYKSKIQRLPVEPISQA
SADQRKGRCGRVAEGVCIRLYDEEDFLSRPGFTDPEIRRTNLASVILSMLSLKLGDIEDF
PFVDPPDARFIKDGFRLLFELGAVDQANRLTPLGRKLSRLPIDPRLARMVLAGAEQGGLR
EVLVVVSALAVQDPRDRPADKREAADQAHRRWQDPESDFVALLNLWHGFEAARDEFSGNR
LRRWCKEHYLNYLRLREWHDTFRQLRQLLREMEIEVPPPTRATNEVEDEQARERAHRESA
VQLHKALLPGLLSHLGLLTENREYLGARNRKFFIHPGSGLARKSPKWLMAFELVETSKLF
ARTVARIEPQWIEPLAGHLVRRTYSDPHWEMKRAQVVANEQVTLFGLPVVSGRKVHYGPI
APGEARELFLRRALVEGEFRTRGAFFDHNRALVEEVEGLEDRARKRDILVDEETLFDFYD
ARIPADIFNGKGFEHWRRQAERDDPDILKFDREALLAREAEEITQAQYPDELMLNGVRYP
LSYRFEPGAPDDGVTLTVPAAMLPQLPLARLEWLVPGLLRDKCIALLKSLPKSLRRQVVP
IPDWVDAALEALVPDDIPLTEALGEFLRRKTGARVHPDDWRTEQLEPHLIMNLKVVDHEG
KTLGEGRDARALERRFEAAAGEGARALAAEASAAEAVTDLPMEALPPSRVTTQAGIRVEA
YPALVPDGDAFRVELFDHPDKAEWAHRTGVARLAMARLPEQVRAIERLSGLNTCALLFAK
VGSKRQLNEDVVEAVFTQVLAMSPLPRSREELASRISRSAAELVPHAETLVATLQAGLEG
HLAVTKALKGNLSLALALVYSDIKAQMQRLVHPGFVGEAGDWLFEYPRYMEAALLRLEKA
PRERMRDQMHMQMVQDFEARLAARRESQRRGGHEAPELVEFGWWIEELRVSLFAQQLGTR
MPVSTKRLERRWAELTGTN
NT seq
4020 nt
NT seq
+upstream
nt +downstream
nt
gtgaccaccgccattcgtcctgattcttctgcgacttctccggagcacgatgagctcgac
cgtctctaccaggcgctcgatgctgtcatgctgcgcgaccgtgccgggctgttgcgtcgg
ctcgacgggctggcgcggcgtcttaaggagggcaagccggtagaccgggggctcgccgag
gccggacgggccgtggtgcgttcgtccacgctggttgcccagcgcgaggcaatgccggtg
acgctggcctatcccgacaccctgccggtggtcgaacggcgggatgatattcttgctgcc
ctgcgcgagcaccaggtagtcgtggtggcgggggagacgggatccggcaagaccacccag
ctgcccaagctctgcctggagctgggcctcggtcgccgcggcctggtcggccatacccag
ccgcgccggctggcggcacgctccgtggcgacgcggctcgccgaggagatggccgtgcct
ctgggtggccaggtgggttaccaggtccgcttcaccgacgagaccggcgacgacaccctg
atcaagctgatgaccgacggcatcctgctggccgagacgcgccatgacccggaccttagc
cgttacgaagcgatcatcatcgacgaggcccacgagcgcagcctcaatatcgatttcctg
ctcggctatttgaagcggctgctggcacgacgccctgatctcaaggtgatcattacctcg
gcgaccatcgatgtggagcgcttcgccgcgcattttgccctgcccagtgaggatggcgag
ccaaggccggcgtcggtggtagaggtgtcgggccgtacctatccggtggaggtgcgctac
cggcccctggtgcgtgacgctgacgacgaggctgaccgcaccctgcaggagggtatcctg
catgcggtggaggagatcgaggcggtcgagcgcgagaagcgctggttccatggtccccgg
gatatcctgatcttcttgcccggggagcgtgagatccgcgaggcggcggataccctgcga
cgtgccgacctcaagggcaccgagatactgccgctctatgcgcggctctctaacgccgag
cagaaccgggtatttgcagcccatgccgggcgccgcatcgtgcttgccaccaatgttgcc
gaaacctcgctcacggtgccgggcatacgctatgtcatcgaccccgggctggtacgcatc
agccgctacagctacaagtccaagatccagcggctgccggtggagcccatcagccaggcc
agtgccgatcagcgcaaggggcgctgtggccgggtggcggaaggtgtctgcattcgcctc
tatgacgaggaggacttcctctcccgccctggcttcaccgaccccgagatccggcgcacc
aacctggcctcggtaatcctgtccatgctgtcgctgaagctgggtgacatcgaggacttc
cccttcgtcgacccgccggatgcccgtttcatcaaggatggcttccgcctgctgttcgag
ttgggggcggtggaccaggccaaccggctgacgccgctggggcgcaagctgagccggctg
cccatcgacccccgcctggcccgaatggtgcttgccggcgcggagcagggtgggctgcgc
gaggtgctggtcgtggtctcggctctggcggtgcaggatccccgcgatcggccggcggac
aaacgcgaggccgccgatcaggcccatcggcgctggcaggatcctgagtccgatttcgtc
gcgctgctcaatctctggcatggcttcgaggcggcgcgcgacgagttttcaggcaaccgg
ctgcggcgctggtgcaaggagcactacctgaattacctgcgcctgcgcgaatggcatgac
acctttcgccagttgcgccagctgctgcgcgagatggagatcgaggtaccgcctcccacg
cgggcgacgaatgaggtcgaggacgagcaggccagggagcgggcacatcgcgagagcgcc
gtgcagcttcacaaggcgctgcttcccgggttgctgtctcatctcggcctgctcacagag
aaccgggaatacctgggcgcgcgcaaccggaagttcttcatccaccccgggtcggggctg
gccaggaaatcgcccaagtggttgatggccttcgagctggtggagacgtcgaagctgttt
gcccgcacggtggccaggatcgagccacagtggatagagcccctggccgggcacctggtc
aggcgcacctacagtgatccccactgggaaatgaagcgggcccaggtggtggccaatgag
caggtgaccctgttcgggctgcccgtcgtctcggggcgcaaggttcactatggccccatc
gcccccggtgaggcacgggagctgttcctgcgtcgcgccctggtggaaggcgagttccgc
acacgaggtgccttcttcgaccacaatcgcgcattggtcgaagaggtggaggggctagag
gatcgggcacgaaagcgtgatattctggtcgatgaagaaacactgttcgatttctacgat
gcccgcattcccgctgatatattcaatggaaagggattcgagcattggcggcggcaagcc
gagcgtgacgaccccgatattctgaagttcgaccgtgaggcactgctcgcccgggaagcg
gaagagatcacccaggcacaataccccgatgaactgatgctgaatggagtacgctatcca
ctgagctaccgtttcgagcctggcgcgcctgacgacggcgtgaccttgacggtaccggct
gccatgttgccccagctgccactggcacggctggagtggctggtgccgggcctgttgcgc
gacaagtgcattgcgctgctgaagtcgctgcccaagtcgctgcgtcgccaggtggtgccg
atacccgactgggtggatgcggccctcgaggcactggtgcccgacgacattcccttgacc
gaggccctgggcgagttcctgcgccgcaagaccggtgcgcgggtccacccggatgactgg
cgtacggagcagctcgagcctcatctgatcatgaacctgaaggtggtcgatcacgagggg
aagacgctgggcgagggtcgcgatgctagggctcttgagcgtcgcttcgaggcggccgcc
ggggaaggcgccagggcccttgccgcggaagccagtgccgccgaggcggtcacggacctg
cccatggaggcgctgccgccctcgcgtgtgaccacgcaggccggtatccgggtcgaggcc
tatcctgcgctggtgcccgatggcgatgcctttcgggtcgaactcttcgaccatccggac
aaggccgagtgggcgcatcgcaccggggtggcgcggcttgccatggcgagactgcctgag
caggtcagggccatcgagcggctgtccggactcaacacctgtgcgctgctgtttgccaag
gtcggcagcaagcggcagcttaacgaggacgtggtggaagccgtattcacccaggtgctg
gccatgtcgcccctgcctcgctcgcgggaggaactggcgtctcgaatcagccgctccgcc
gcagagcttgtgccgcatgccgaaaccctggtcgctaccctgcaggccggactcgaaggg
cacctggcagtgaccaaggcgttgaagggcaatctcagcctggcgttggcgctggtttac
agtgatatcaaggcccagatgcagcgtcttgtccatccaggcttcgtgggtgaggcgggt
gactggctctttgagtatccacgctacatggaagccgccctgcttcgcctggagaaggcg
ccacgggagcgcatgcgcgaccagatgcacatgcagatggtgcaggacttcgaggcgcgt
ctggcggcccggcgtgagagccagcggcgtggtggacacgaagccccggagctggtcgag
ttcggctggtggatcgaggagctgcgtgtctccctgttcgcacagcaactcggcacccgg
atgccggtctccaccaagcggctggagcgacgctgggccgaattgacaggtacgaattga
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