Halomonas chromatireducens: LOKO_02606
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Entry
LOKO_02606 CDS
T04292
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
hco
Halomonas chromatireducens
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hco03016
]
LOKO_02606 (rnd)
Enzymes [BR:
hco01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
LOKO_02606 (rnd)
Transfer RNA biogenesis [BR:
hco03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
LOKO_02606 (rnd)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
AMD01666
UniProt:
A0A0X8HFF8
LinkDB
All DBs
Position
complement(2777388..2778518)
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AA seq
376 aa
AA seq
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MSLTPEIHWIDTPEALDAACALVADASVIALDTEFFREKTFHPVPALIQFSAGGPAWLID
PLAVDCTDPFRRLLSEGPLKLLHASSEDLEVLAHWAGGAVAPLVDTQIAQSLLGENAAMG
YQRLVEHWTGEVLPKDETRSDWLVRPLSESQCLYAALDVVFLLKVWEHQREALDRLGRME
WLQADCSELVAQALRSEGADGQWYLRNRQLWRLSPRQIEAYRLLTIWREGEARRRNLPRG
WLVNDRVLHGIAERMPENRYQLAEVEDIKPGLIKRDGDTFLSLVKQAREAEGETLPPELP
SPMDPAFKRRLKALKRVVNGEAERLGLAPEVLLRRRELEAMVTADLKGEVLPLPGGWRGE
CLAEALESVLSEVNAS
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgtccctgacccccgagatacactggatcgatacgcccgaggcgctcgacgccgcctgt
gccctagtcgcggatgcctcggtcattgcactggataccgagttcttccgcgagaagacc
tttcatccagtgccggcgctcatccagttctccgccggcggtccggcctggttgatcgac
ccccttgccgtggactgcaccgaccccttccgccgcctgctgagcgaagggccgctcaag
ctgttgcacgccagcagcgaggatctggaagtgctggctcattgggcaggcggggcggtg
gcgccactggtcgatacccagatcgcccaatccctgctgggagaaaatgctgccatgggc
tatcagcgtctggtcgagcactggaccggtgaagtgctgcccaaggatgagacgcgctcc
gactggctggtacgtccgctgagcgaatcccagtgcctctatgcggccctggacgtggtc
tttctgctcaaggtctgggagcaccagcgagaggctctcgatcggttggggcgcatggaa
tggctgcaggccgactgcagcgagctggtggcccaggcgttacgcagtgaaggggcggat
gggcagtggtatctccgaaatcgccagctgtggcggctctcgcctcgtcagatagaggcc
taccgtctgttgacgatatggcgggaaggcgaggcacggcgtcgcaacctgccgcggggg
tggctggtcaatgaccgagtcctccatggcatcgccgagcgcatgcccgagaaccgttac
cagttggccgaagtcgaagatatcaagccggggctgatcaagcgcgacggtgacaccttc
ctttcgctggtgaaacaggctcgggaggcagagggtgaaaccctcccccccgagttgcct
tcccccatggatccggccttcaagcgacgtctcaaggcgctaaagcgggtggtcaacggt
gaggctgagcggctgggcctggcgccggaggtgttgctgcgccgccgcgagctcgaggcc
atggtgaccgcggacctgaagggggaggtactgcccttgccgggtgggtggcggggcgag
tgccttgccgaggcccttgaaagtgtgctctccgaggtgaatgcgtcatga
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