KEGG   Halomonas chromatireducens: LOKO_02962
Entry
LOKO_02962        CDS       T04292                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
hco  Halomonas chromatireducens
Pathway
hco03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hco00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LOKO_02962
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hco03021]
    LOKO_02962
   03019 Messenger RNA biogenesis [BR:hco03019]
    LOKO_02962
Transcription machinery [BR:hco03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     LOKO_02962
Messenger RNA biogenesis [BR:hco03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     LOKO_02962
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB S1CSD-TOTE-2 NACHT AAA_22 Fungal_virus_P2_C AAA_25 AAA
Other DBs
NCBI-ProteinID: AMD02010
UniProt: A0A0X8HG34
LinkDB
Position
complement(3153414..3154673)
AA seq 419 aa
MNLTELKQKTVPELLELAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQIN
FDKPENAKHKILFENLTPLFPNERLRMEIGNGSTEDLTSRIIDLTAPIGKGQRGLIVSPP
KAGKTLMLQNIATSITRNDPDCHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAERRVYPAINI
RRSGTRREDLIASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaatcttaccgaactcaagcaaaagaccgtcccggagctcctggagcttgcccgcgaa
atgggcatcgacaacctggctcgctcgcgcaagcaggacatcatcttcgccatcctcaag
aagcacgccaagagcggcgaggatatctatggagatggggtgctcgaaatcctgcaggac
ggcttcggcttcctgcgcagcgccgacagctcctacctggccggccccgacgacatctat
gtttcgccgtcgcagatccgtcgcttcaacctgcgcaagggcgattccatttccggcaag
atccggccgccgaaggaaggggagcgttacttcgcgctgctcaaggtcagccagatcaac
ttcgacaagccggaaaacgccaagcacaagatcctgttcgagaacctgacgccactgttc
cccaacgagcggctgcgcatggagatcggcaacggctccaccgaggatctgacgtcgcgc
atcatcgatctcaccgcacccatcggcaagggccagcgtggcctgatcgtctcgccgccc
aaggcgggcaagacgctgatgctgcagaacatcgccacctcgatcacgcgcaacgacccc
gactgtcacctgatcgtgctgctgatcgacgagcgccccgaggaagtgaccgagatgtcg
cgcacggtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccggcccgtcacgtc
caggtcgccgagatggtcatcgagaaggccaagcgcctggtggaacacaagaaggacgtg
gtgatcctgctcgactccatcactcgcctggcgcgcgcctacaacaccgtggtgcccagc
tccggcaaggtgctcaccggcggtgtcgacgcccacgccctggagaagcccaagcgtttc
ttcggcgccgcgcgtaacatcgaggagggcggcagcctgaccatcatcgccacggcgctg
gtggataccggctccaagatggacgaggtgatcttcgaggagttcaaaggcaccggcaac
atggaagcccacctggaccgcaagctcgccgagcgtcgcgtctacccggcgatcaacatt
cgccgttccggcacccgccgagaggacctgatcgcctccgaggacgagatgcagcgcatg
tggatcctgcgcaagctgctcaacccgatggaagataccgcggcgaccgagttcctgatc
gaccgactcaaggatacgaagacgaacctcgagttcttcgaggcaatgaagagacgctga

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