Halomonas chromatireducens: LOKO_02962
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Entry
LOKO_02962 CDS
T04292
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
hco
Halomonas chromatireducens
Pathway
hco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKO_02962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hco03021
]
LOKO_02962
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_02962
Transcription machinery [BR:
hco03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LOKO_02962
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LOKO_02962
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
S1CSD-TOTE-2
NACHT
AAA_22
Fungal_virus_P2_C
AAA_25
AAA
Motif
Other DBs
NCBI-ProteinID:
AMD02010
UniProt:
A0A0X8HG34
LinkDB
All DBs
Position
complement(3153414..3154673)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKTVPELLELAREMGIDNLARSRKQDIIFAILKKHAKSGEDIYGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRKGDSISGKIRPPKEGERYFALLKVSQIN
FDKPENAKHKILFENLTPLFPNERLRMEIGNGSTEDLTSRIIDLTAPIGKGQRGLIVSPP
KAGKTLMLQNIATSITRNDPDCHLIVLLIDERPEEVTEMSRTVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVDTGSKMDEVIFEEFKGTGNMEAHLDRKLAERRVYPAINI
RRSGTRREDLIASEDEMQRMWILRKLLNPMEDTAATEFLIDRLKDTKTNLEFFEAMKRR
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaactcaagcaaaagaccgtcccggagctcctggagcttgcccgcgaa
atgggcatcgacaacctggctcgctcgcgcaagcaggacatcatcttcgccatcctcaag
aagcacgccaagagcggcgaggatatctatggagatggggtgctcgaaatcctgcaggac
ggcttcggcttcctgcgcagcgccgacagctcctacctggccggccccgacgacatctat
gtttcgccgtcgcagatccgtcgcttcaacctgcgcaagggcgattccatttccggcaag
atccggccgccgaaggaaggggagcgttacttcgcgctgctcaaggtcagccagatcaac
ttcgacaagccggaaaacgccaagcacaagatcctgttcgagaacctgacgccactgttc
cccaacgagcggctgcgcatggagatcggcaacggctccaccgaggatctgacgtcgcgc
atcatcgatctcaccgcacccatcggcaagggccagcgtggcctgatcgtctcgccgccc
aaggcgggcaagacgctgatgctgcagaacatcgccacctcgatcacgcgcaacgacccc
gactgtcacctgatcgtgctgctgatcgacgagcgccccgaggaagtgaccgagatgtcg
cgcacggtgcgcggcgaagtggtcgcctcgaccttcgacgagccgccggcccgtcacgtc
caggtcgccgagatggtcatcgagaaggccaagcgcctggtggaacacaagaaggacgtg
gtgatcctgctcgactccatcactcgcctggcgcgcgcctacaacaccgtggtgcccagc
tccggcaaggtgctcaccggcggtgtcgacgcccacgccctggagaagcccaagcgtttc
ttcggcgccgcgcgtaacatcgaggagggcggcagcctgaccatcatcgccacggcgctg
gtggataccggctccaagatggacgaggtgatcttcgaggagttcaaaggcaccggcaac
atggaagcccacctggaccgcaagctcgccgagcgtcgcgtctacccggcgatcaacatt
cgccgttccggcacccgccgagaggacctgatcgcctccgaggacgagatgcagcgcatg
tggatcctgcgcaagctgctcaacccgatggaagataccgcggcgaccgagttcctgatc
gaccgactcaaggatacgaagacgaacctcgagttcttcgaggcaatgaagagacgctga
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