Halomonas chromatireducens: LOKO_03309
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Entry
LOKO_03309 CDS
T04292
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hco
Halomonas chromatireducens
Pathway
hco03410
Base excision repair
hco03430
Mismatch repair
hco03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LOKO_03309 (recJ)
03430 Mismatch repair
LOKO_03309 (recJ)
03440 Homologous recombination
LOKO_03309 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hco03400
]
LOKO_03309 (recJ)
DNA repair and recombination proteins [BR:
hco03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LOKO_03309 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LOKO_03309 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LOKO_03309 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
AMD02354
UniProt:
A0A0X8HGU3
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All DBs
Position
complement(3525612..3527417)
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AA seq
601 aa
AA seq
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MDVIAPPDLHARLRPRLLPRPRNQALYARAQAEGLTELQARVLAGRLAGYEGELAPLTQP
SLRYLEHPERLADGRRAAERIAQAVVEGEHIGILTDYDVDGITSHVVIRRTLVELFGVPE
ARLHSLIGHRIHDGYGISLPLVERTLSLKPRPSLVITADCGSSDEPRIARLRAAGIDVVV
SDHHALPVEGPPASAHAVVNPTRDDCDYPDATIAGCMVAWLVMSLARQVLIEWGALPSAT
PKLSPWLSYVALGTVADCVSLGASPANRAVVSHGLTLINRMEAACWRAMAARLGEDSTPF
TAETLAFQMGPRINARSRLDDPYAALHFMLAADDGTATRHLETLDQDNQSRKAIEADMTE
QARLLAVPQLDANHPAIVVFLEGGHAGGQGIVASRLVQAYGRPALVMTPAAAPGMLTGSG
RSIEALHLRDALQRTFELAPEALPRFGGHRGAAGVGVPADRFDAFRTAFLQAVGEQLGGI
ELFPHVLTDGELLPAQFDLSTLDELERLGPYGREFDAPLFEGAFLVEALRPVGADGSHLM
MTLSAGAVSLRAIWFRALTPGELPAFGLGDRLRCAYRLSRNRWKGRESLQLMVDYAEPLD
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
ttggacgtgattgcgccccccgacctgcacgcccgactcaggccacggctgctgcctcgg
ccgcgcaaccaggcgctgtatgcccgcgcccaggccgaaggcctgaccgaactgcaggcc
cgcgtgcttgccggtcgcctggccggctacgagggtgagctggcgcccctgacccagccc
agcctgcgctatctcgagcacccggagcgcctcgccgacggtcgccgtgccgcggagcga
atcgcccaggccgtggtcgagggcgaacatatcggtatcctcaccgactacgacgtcgac
ggcatcacttcccatgttgtcattcggcgtaccctggtcgagctgttcggcgtgcccgag
gcgcgcctgcacagcctgatcggccaccgtattcacgacggctacggcatcagcctgccg
ttggtggagcgcacgctgtcgctgaagccgcggccaagcctggtcattaccgccgactgt
ggcagctccgatgagccgcgcatcgcccggctcagggcggccggcatcgacgtggtggtc
agcgaccatcacgccctgccggtggaggggccaccggcttcggcccatgccgtcgtcaat
ccgacgcgagacgactgcgactatcccgacgccaccatcgccggctgcatggtggcctgg
ctggtcatgtccctggcgcgccaggtgctgatcgagtggggtgcgctgcccagcgccacg
cccaagctctcgccctggctctcctacgtggcactgggtaccgtagcggactgtgtctcc
ttgggggctagcccggccaatcgcgcggtggtcagccacgggctgacgctgatcaaccgc
atggaggcggcctgctggcgcgccatggcggccaggctgggggaggacagcacccccttc
accgccgagaccctggccttccagatggggccgcgaatcaatgctcgctcgcgcctcgac
gacccctacgccgcgctgcacttcatgcttgccgccgatgacggcacggcaacccggcat
ctggagacgctggaccaggacaaccagtcgcgcaaggccatcgaggccgacatgaccgag
caggcgcggctgctggcggtgccgcagcttgacgccaatcatcccgccatcgtggtgttt
ctggaagggggccacgccggggggcagggcatcgtcgcctcgcggctggtccaggcctat
ggccggcccgccctggtgatgaccccggcggcggcgccgggcatgcttaccggttcggga
cgctccatcgaggcgctgcacctgcgtgacgccctgcagcgtaccttcgagctggccccc
gaggcactgccacgattcggcgggcatcgcggtgcggccggggtcggcgtaccggccgac
cggttcgatgcctttcgcacggccttcctgcaggcagtaggcgaacagctgggcggcatc
gaactgtttcctcacgtgctcaccgacggcgagctgctgccggcccagttcgacctgtcg
acgctggacgagctggagcggctgggcccctacgggcgggagttcgatgcacctctgttc
gagggcgcattcctggtggaggcgttaaggccagtaggtgccgatggcagccacctgatg
atgacgctctcggcaggggcggtgagcctgcgagcgatctggtttcgcgccttgaccccc
ggcgagctgccggcctttggcctgggtgatcggctgcgctgcgcctatcggttgagccgt
aaccgctggaaggggcgggagtcgctgcagctgatggtggattacgccgagccgttggat
ggttga
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