Halomonas chromatireducens: LOKO_03414
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Entry
LOKO_03414 CDS
T04292
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hco
Halomonas chromatireducens
Pathway
hco03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hco00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOKO_03414 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hco03019
]
LOKO_03414 (pnp)
03016 Transfer RNA biogenesis [BR:
hco03016
]
LOKO_03414 (pnp)
Enzymes [BR:
hco01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LOKO_03414 (pnp)
Messenger RNA biogenesis [BR:
hco03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LOKO_03414 (pnp)
Transfer RNA biogenesis [BR:
hco03016
]
Prokaryotic type
tRNA degradation factors
LOKO_03414 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH_2
KH-I_KHDC4-BBP
NifW
Motif
Other DBs
NCBI-ProteinID:
AMD02457
UniProt:
A0A125R0P8
LinkDB
All DBs
Position
complement(3634267..3636399)
Genome browser
AA seq
710 aa
AA seq
DB search
MNPVKKTFQYGRSTVTLETGRIARQASGAVLVTMDDTVVLCTVVAKKELKPGQDFFPLAV
FYQEKTYAVGKIPGGFFKREGRPTEKETLTSRLIDRPVRPLFPKGFMNEVQVICTVLSTD
RNHDPDIAAMLGTSAALCIAGVPFNGPLGAARVGFDEEKGYFLNPTVEELANSELNMVVA
GTEKAVLMVESEAKELLEDEMLGAVLYGHQEMQVAIEAIKELTAEAGKPKWDWQPPAENT
PLKDAIAQGFEAKVGEAYRVTDKMARQDALSALKAEAVEQLAGEEEGKFDADEVKGAFAA
LEKRVVRSRVVKGEPRIDGRDQKTVRPLNIEVGSLPKTHGSSIFTRGETQAIVIATLGTL
RDAQLIESLEGERKDRFMLHYNFPPYCVGEAGFMGGPKRREIGHGRLARRSIEAMLPTSE
DFPYTIRVVSEITESNGSSSMASVCGSSLALMDAGVPMKAPVAGIAMGLVKDADGFAVLT
DILGDEDHLGDMDFKVAGSSAGVTALQMDIKIEGINEEIMEVALQQANEARLHILQQMND
VIAQSRAEVSENAPSMATIKIDPDKIRDVIGKGGATIRKICEDTGASIDLDDDGTVRIYA
EDKAAAKKAIDTVLAITAEAEIGKLYRGKVVRIADFGAFINIMPGTDGLVHISQIVPERV
NDVRDFLNEGDEVIVKVLDIDNRNRVKLSIKEITPEEKAAFEAAEAEPVV
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccggtcaagaaaacatttcagtacggtcgcagcaccgtcaccctggaaaccggg
cgcatcgcccgccaggccagcggtgccgtgttggtcaccatggacgataccgtggtgctg
tgcaccgtcgtcgccaagaaagagctcaagccagggcaggacttcttccccctggcggtg
ttctatcaggaaaaaacctacgcggtcggcaagatccccggcggcttcttcaagcgcgag
gggcggcctacagagaaggagaccctcacgtctcgcctgatcgatcgcccggttcgcccg
ctgttccccaaggggttcatgaacgaggtgcaggtgatctgtaccgtcctctctaccgac
cgcaaccatgacccggacatcgccgccatgctcggcacctccgcggcgctgtgcatcgcc
ggcgtgccgttcaacggccccctgggtgccgcgcgggtgggcttcgacgaggagaagggc
tacttcctcaaccccaccgtggaagagcttgccaactccgagctgaacatggtcgttgcc
ggtaccgagaaagcggtgctgatggtggagtccgaggccaaggagctgctcgaggacgaa
atgctgggcgccgtgctctatggccaccaggagatgcaggtcgccatcgaggccatcaag
gagctgaccgccgaggccggcaagccgaagtgggactggcagccgcccgccgagaacacg
cccctcaaggacgccattgcccagggcttcgaggccaaggtgggcgaggcctatcgtgtc
accgacaagatggcccggcaggacgccctgtcagcactcaaggccgaggccgtcgagcag
ctcgccggtgaagaggaaggcaagttcgatgccgatgaggtcaagggcgccttcgccgcg
ctggagaagcgtgtggttcgctcccgcgtcgtcaagggcgagccgcgtatcgatggccgt
gaccagaagacagtgcggcctttgaatatcgaagtgggtagcctgcccaagacccatggc
tcgtcgatcttcacccgcggcgagacccaggccatcgtcatcgccaccctgggtaccctg
cgcgatgctcagctgatcgagtcgctggagggtgagcgcaaggaccgcttcatgctgcac
tacaacttccctccctattgcgtgggtgaagctggcttcatgggtggacccaagcgtcgc
gaaattggccacggccgcctggcccgtcgcagcatcgaggccatgctgcccacgtccgag
gacttcccctacaccatccgtgtggtatcggagatcaccgagtccaacggctcgagctca
atggcatccgtgtgcggctcctcgctggcactgatggacgccggcgtgccgatgaaggca
ccggtggcgggtatcgccatgggcctggtcaaggatgccgacggcttcgccgtattgacc
gatatcctgggcgacgaggatcacctgggcgatatggacttcaaggtggctggttcgtct
gctggtgtgactgcgctgcagatggatatcaagatcgaggggatcaacgaggagatcatg
gaggttgcccttcagcaggccaatgaggctcgcctgcatatcctccagcagatgaacgac
gtgatcgcccagagtcgtgcggaggtgtccgaaaacgccccctccatggcaaccatcaag
atcgacccggacaagatccgcgacgtcatcggcaagggcggcgccaccattcgcaagatc
tgcgaagacaccggcgcctccatcgatctcgacgacgacggcaccgtgcgtatctacgcc
gaggacaaggcggcggccaagaaggccatcgataccgtgctggcgatcaccgccgaggca
gaaatcggcaagctctaccgcggcaaggtggtacgcattgccgactttggcgccttcatc
aacatcatgccgggaaccgacgggctggtgcatatctcgcagatcgtgcccgagcgggtc
aacgacgtgcgcgacttcctcaatgagggcgacgaagtcatcgtcaaggtgctcgatatc
gacaatcgcaaccgggtgaagctctcgatcaaggagatcactccggaagagaaggccgcc
ttcgaagcggcggaagccgaacctgtcgtctaa
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