Helicobacter cinaedi PAGU611: HCN_0430
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Entry
HCN_0430 CDS
T02034
Name
(GenBank) single-strand DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03410
Base excision repair
hcp03430
Mismatch repair
hcp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HCN_0430
03430 Mismatch repair
HCN_0430
03440 Homologous recombination
HCN_0430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcp03400
]
HCN_0430
DNA repair and recombination proteins [BR:
hcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HCN_0430
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HCN_0430
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HCN_0430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
OKR_DC_1_N
Motif
Other DBs
NCBI-ProteinID:
BAM11731
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All DBs
Position
440072..441664
Genome browser
AA seq
530 aa
AA seq
DB search
MRKDECKSHTKQDILHFLQSRDLECGIRTLRDLPTPQNLNNTESGAKIITQAMERNNEIL
VVGDYDADGVCASAIISLFFKALEYQHFRLIIPHRFEDGYGVSAALLEKNAQNAAVVVSV
DNGITAFCAGQWCKAKGIPFIITDHHTPTDTLPQADVIINPMLQDSTFAQKSICGAVVAW
YFCAAIKQNLKANIDMGMFLEYLAIATIADVMPLTGINRILVKKGLESLRTSSNVLATLL
RESFARFKKPITAENLAFDFIPLLNCAGRMESANKALELLLSPSLAHATHIYTELQNLNN
KRKEIQQDILQKAQEHIIQTDDFVLSYGDSWHEGVLGIVAAKLARIYKKSAFVLSQNADV
LKGSGRSYGGANLIASITPLQQYCLGLGGHSGAVGLSLESCQLGTLIEKLQETMVYEECD
ENETFFTLGVESVDMELFEILESFEPFGEGNPKPTFLLENLTIQEIKPLGREGKHFEYTL
ADSNGMCLAGLEFLAPTRREVGQCVDIHIELMRDYYKNCIKAKILEVFVR
NT seq
1593 nt
NT seq
+upstream
nt +downstream
nt
atgagaaaagatgaatgtaaaagccacacaaagcaagacattcttcattttctacaatct
cgtgatcttgagtgtggtatccgcaccctgcgagacttgcccacgccacagaatctaaac
aacactgaatctggagcaaaaatcatcactcaagctatggaaagaaataatgagattctt
gtcgttggggattatgatgcagatggtgtgtgtgcaagtgcgattataagcctttttttt
aaggcattggagtatcagcattttaggcttattattccacatcgctttgaagatggctat
ggcgtgagtgccgcccttttagagaagaacgctcaaaatgccgctgtggttgtgagcgta
gataatggtattaccgcattttgtgcagggcagtggtgcaaggcaaagggcattcctttt
atcatcacagatcatcacacacccacagatacgcttccgcaggcagatgtcatcattaat
ccaatgctgcaagattctacttttgcccaaaaaagcatttgtggagcagtggtggcgtgg
tatttttgtgcggcgataaagcaaaatctcaaagcaaatattgatatgggaatgttttta
gaataccttgccattgccacaatcgccgatgttatgccccttacagggataaatcgcatt
cttgtgaaaaagggcttagaatcgcttcgcacctcttctaatgtgcttgccacacttttg
cgtgagagttttgctagattcaaaaagcccataaccgcagagaatcttgcctttgatttt
attccattgctgaattgtgctgggcgtatggagagtgcaaataaggctttagagcttttg
cttagtcctagtttagcccacgctacacacatttacacagagctacaaaatctcaataat
aaacgcaaagagattcagcaagacattctccaaaaggcacaggagcatattatccaaaca
gatgattttgtcctaagctatggggattcttggcacgagggggtgcttggcattgtggcg
gcaaaacttgcgagaatctacaaaaaaagtgcttttgtgttgagccaaaatgctgatgtg
ctaaaggggagcggacgctcttatggtggggcaaatttgattgcaagtatcacgccattg
caacaatattgccttgggttaggtgggcatagcggagctgtggggctaagtttagaatct
tgtcagcttgggacattgatagaaaaattgcaggaaactatggtgtatgaagaatgcgat
gaaaatgagacatttttcacacttggggtggaaagcgttgatatggagctttttgagatt
ttagaatcttttgagccttttggggaggggaatcctaagcctacatttttgctagaaaat
cttaccatacaagagataaagccactgggcagggaggggaagcattttgaatatactttg
gcggattctaatggaatgtgtctggcgggactagagtttttagcaccaactaggcgggag
gtggggcagtgtgtggatatacacattgagcttatgcgtgattattataagaactgcatt
aaagcaaaaatccttgaagtatttgtaaggtag
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