Helicobacter cinaedi PAGU611: HCN_0499
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Entry
HCN_0499 CDS
T02034
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCN_0499 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcp03400
]
HCN_0499 (uvrB)
DNA repair and recombination proteins [BR:
hcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HCN_0499 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HCN_0499 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
Kinesin
UB2H
Microtub_bd
AAA_30
AAA_22
SWI2_SNF2
AAA_7
DUF87
MogR_DNAbind
Motif
Other DBs
NCBI-ProteinID:
BAM11789
LinkDB
All DBs
Position
complement(515027..517003)
Genome browser
AA seq
658 aa
AA seq
DB search
MAKFILESQYAPAGDQPQAITKITDSILNGAKYSTLVGVTGSGKTYTMANIIAKLNLPTL
IMTHNKTLAAQLYSEFKGFFPKNKVEYFISHFDYYQPEAYIPRRDLFIEKDSSINEDLER
LRLSATTSLLAYDDVIVVASVSANYGLGNPQEYLTMIEKLEVGQSYTQKALLLKLVNMGY
TRNDSIFERGNFRVNGEVVDIFPAYNENEFIRIEFFGDEIERIGAFDALERQNLAWLKSF
VLYAANQFIVSEKRLQLALQNIESELEMRLQEFELENKQIEYQRLKGRTEFDLEMIRESG
ICKGIENYARHLTGKAPGETPYSLLDYFEQKGKPYLIIVDESHVSLPQFGGMYAGDRSRK
EVLVEYGFRLPSALDNRPLRFDEFINKAPHFLFVSATPAKLELELSQSHIAEQIIRPTGL
LDPLYEVRDSDNQVLDLYDEIKLRVENNERVLITTLTKKMAEELSKYYGELGIKVRYMHS
DIDAIERNHLIRSLRLGEFDVLIGINLLREGLDLPEVSLIAIMDADKEGFLRSETSLIQT
MGRAARNVNGKVILYAKKITGSMQRAFDITDYRRAKQEAFNKEHNITPKSVQRGLESELK
IESSGLSRLYEKGNKKIPKSERDSIIKDLTLKMQQAAKALEFEEAARIRDEIAKIRKM
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaatttatcctagaatcccaatatgctccagcaggagatcagccccaagccatt
acaaaaatcacagattctattcttaatggagcgaagtattccacacttgttggcgttaca
ggcagtgggaaaacctacacgatggcaaatatcattgccaagctcaatctcccaactctc
attatgacgcataataaaaccctagccgcccagctttacagcgaatttaagggatttttt
ccaaaaaacaaggtggagtattttatcagccactttgattactaccagccagaggcgtat
atcccacgccgagatttgtttatagaaaaggattctagtatcaatgaagatttagaacgc
ttaagactttcagccacgacttcacttctagcctatgatgatgtgattgtggtagcttca
gtgtcggcaaactatgggctaggcaacccgcaagaatacttaacaatgatagaaaagcta
gaagtggggcagagctacacgcaaaaagccttgcttctaaagcttgtcaatatgggctat
acgagaaatgacagcatttttgagcgggggaatttccgtgtaaatggtgaagtggtggat
atattccctgcgtataatgaaaatgagtttatccgtattgagttttttggcgatgagatt
gaacgcattggggcttttgatgcgttggaaaggcagaatctagcgtggctaaaaagcttt
gtgctgtatgcggcaaatcaatttatcgtaagtgaaaagcgattgcaacttgccctgcaa
aatatagaatctgaacttgaaatgcgtttgcaagaatttgagctagaaaataagcaaata
gaatatcagcgtttaaaaggacgcacggagtttgatttagaaatgattagagaatctgga
atctgcaaggggattgaaaactacgctagacatctcacaggcaaagccccgggcgagacg
ccttattccttgctagattattttgagcaaaaaggaaagccatatcttattatcgttgat
gaatctcacgtgagtttgccgcaatttggtggaatgtatgcgggggatagaagccgcaag
gaagtgcttgtggaatatggcttccgcctacctagtgcgttagataatcgccctttgcgt
tttgatgagtttatcaataaagccccgcattttctttttgtctctgccacccctgcaaag
ctagagttagagcttagtcaaagccatattgccgagcagattatccgcccaacagggctt
ttagatccgctgtatgaagtgcgagatagtgataatcaagtgctcgatttatacgatgag
ataaaactaagggtggaaaataatgaacgagtgcttatcaccacactgactaaaaaaatg
gcagaagagttaagcaaatattatggggagcttggaatcaaggtgcggtatatgcatagt
gatattgacgccattgagcgaaatcatcttatccgttcgctgcgattaggggaatttgat
gtgctaattggcattaaccttttgcgtgaggggctggatttaccggaagttagcctaata
gccataatggatgcggataaagaaggattcttacgcagtgagacaagccttattcaaaca
atggggagggcggctaggaatgtcaatggcaaggtgattttatatgctaaaaaaattaca
ggctctatgcaaagggcgtttgatattacagactatcgccgagccaaacaagaagcattt
aataaggagcataatatcacgccaaagtccgtgcaaagggggcttgaaagtgagctaaaa
atagaatctagtggcttatcacggctctatgaaaaaggaaataaaaagattccaaaatca
gagcgagattcaatcattaaagacttaacgcttaaaatgcagcaagccgctaaggcattg
gagtttgaagaagcagctagaatccgcgatgagatagctaaaatccgcaagatgtaa
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integrated database retrieval system
