Helicobacter cinaedi PAGU611: HCN_0581
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Entry
HCN_0581 CDS
T02034
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HCN_0581 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcp03021
]
HCN_0581 (rpoA)
03400 DNA repair and recombination proteins [BR:
hcp03400
]
HCN_0581 (rpoA)
Enzymes [BR:
hcp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HCN_0581 (rpoA)
Transcription machinery [BR:
hcp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HCN_0581 (rpoA)
DNA repair and recombination proteins [BR:
hcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HCN_0581 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
TRAPP
RNA_pol_L_2
Motif
Other DBs
NCBI-ProteinID:
BAM11866
LinkDB
All DBs
Position
592275..593279
Genome browser
AA seq
334 aa
AA seq
DB search
MNMIKIEPYIPTDISIEEVSSNRIKISAYPFESGYAITLAHPLRRLLLLSSVGYAPTALK
IQGVTHEFDSIRGIVEDVSHFISNLKNIRFLIKDETLDSVQVHYEFKGPMVLSANELANE
SVDVVNPEAYLATINENASISFSLIVQKGIGYVPSESIRGKIAEDYIPLDAYFTPVKKAI
YEIENVLVEDNPNYEKIIFDIETDGQIEPLTAFKEAISVMHKQMSIFGVDLSATPNGSKS
IAEDSGELKTLMIKIDTLNLSARCFNCLDRSGLKYVGELVIMSENELKNIKNMGKKSYDE
ITEKLEELGYPVGGEIAEDILQLLNRKLAKIRNS
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgattaaaattgagccttatatccctacggatataagcattgaagaggtttca
agcaatagaattaaaatcagtgcttatccttttgaatctggctatgctattaccttagca
catccattgcgtcgcttgttgcttttaagttctgtggggtatgctcctactgcgcttaag
attcagggtgttacgcacgagtttgattctattcgtgggattgttgaagatgtctctcat
tttattagcaatcttaaaaacattcgctttcttatcaaagatgagacacttgatagtgtg
caggtgcattatgagtttaagggacctatggtgctaagtgccaatgagcttgccaatgaa
agtgtagatgtggtgaatcctgaggcgtatttggctacaattaatgagaatgcttcaatt
agtttttcactcatcgtgcaaaagggtataggctatgtgccaagcgagagtatccgtggc
aagatagcagaggattatattcctcttgatgcgtatttcacacctgtgaaaaaggctatt
tatgagattgaaaatgtgcttgttgaggataatccaaactatgaaaagattatttttgac
atagagacagatgggcagattgagccacttactgcatttaaagaggctatatcggttatg
cataagcaaatgagtatctttggtgttgatttaagtgctacgccaaatggcagtaagagt
attgctgaagattctggggagttgaagacattgatgattaagattgatacactgaatctt
agtgcaagatgctttaactgccttgatagatcaggcttgaagtatgtgggagagcttgtt
attatgagtgaaaatgagcttaaaaacattaagaatatgggtaagaaatcctacgatgag
ataactgaaaagttagaggagcttggataccctgttggtggggaaattgctgaagacatt
ttgcagcttcttaatcgtaaattagcaaaaattagaaatagttag
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