Helicobacter cinaedi PAGU611: HCN_0818
Help
Entry
HCN_0818 CDS
T02034
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCN_0818 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcp03021
]
HCN_0818 (rho)
03019 Messenger RNA biogenesis [BR:
hcp03019
]
HCN_0818 (rho)
Transcription machinery [BR:
hcp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HCN_0818 (rho)
Messenger RNA biogenesis [BR:
hcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HCN_0818 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
ATPase_2
Spore_III_AA
S1CSD-TOTE-2
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BAM12074
LinkDB
All DBs
Position
complement(824954..826240)
Genome browser
AA seq
428 aa
AA seq
DB search
MAEHKRTHTPVEGYQLEELRTKSIKQLISIAEEVKVENPSDYRRQDLIFEILKNQVNQGG
YILFSGILEITNEGYGFLRALTESLADSQNDTYVSQSQIRRFALRNGDIVTGQVRAPKDQ
ERYYALLKIEAINYMSLEENKNRPLFDNLTPLFPQEQLKLEYESSKVTGRMLDLFSPIGK
GQRALIVAPPRTGKTELMKELAHGIAKNHPEVELMVLLVDERPEEVTDMERSVKGQVFSS
TFDMPATNHIRVADLVIESAKRKVEMGKDVVILLDSITRLARAYNAATPSSGKVLSGGVD
ANALHKPKRFFGAARNIEQGGSLTIIATALIETGSRMDEVIFEEFKGTGNSEIVLARNIA
DRRIYPAFDVLKSGTRKDDLLLGKDNLTKVWMLRNVMHTMDDVEALSFIYSKMKQTKDNE
EFLNMMQE
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggcagaacacaaacgaactcacacacctgtggaaggctatcagctagaagagctccgc
acaaaaagcattaaacaacttattagcatcgctgaagaagtcaaggttgaaaatcctagt
gattatcgccgacaagatctcatctttgagattctaaaaaatcaagtcaatcaaggcgga
tatatccttttttcagggattttagaaattacaaatgaaggctatggctttttgcgtgct
ttgacagaaagtcttgcagattctcaaaatgacacttatgtttcacaatctcaaatccgc
cgcttcgccttgcgtaatggcgatattgtaaccggacaggtgcgcgccccaaaagatcag
gagcgatattatgcacttttaaagattgaagccattaattatatgtcgcttgaagagaat
aaaaaccgccctctttttgataatctcacccccctattcccacaagagcagctcaagctt
gaatatgaatctagcaaagttacaggtagaatgctagatctctttagccccataggcaag
gggcagagagcgcttattgtagcccctcctcgcacaggaaaaacggagcttatgaaagag
ttagcccacggcattgcgaaaaatcaccccgaagttgaacttatggttttgctcgttgat
gagcgacccgaagaagtaactgatatggagcggagcgtcaaagggcaggtgtttagctct
acttttgatatgccagcgacaaatcatatccgcgtagctgatttagttattgaatctgcc
aagcgaaaggttgaaatgggtaaagatgtggtgattttactagattctatcacgcgtctt
gctcgtgcgtataatgccgctacaccttcaagtggtaaggtgctaagcggtggggttgat
gccaatgctttgcataagcctaagcgattttttggtgcagctagaaatatagagcaaggc
ggaagccttaccatcatcgctacagcccttattgagacaggctctagaatggacgaagtg
atttttgaagagtttaaaggcacaggtaatagcgaaatcgtcttagcacgaaatattgct
gatcgcagaatctacccagcctttgatgtgcttaaaagcggaacgcgaaaagatgacttg
ctacttggcaaagataatctcacaaaagtgtggatgctacgcaatgtaatgcacacaatg
gacgatgtagaagcgcttagctttatttattcaaaaatgaagcaaacaaaggacaatgaa
gagtttttaaatatgatgcaagagtag
DBGET
integrated database retrieval system
