Helicobacter cinaedi PAGU611: HCN_0871
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Entry
HCN_0871 CDS
T02034
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hcp
Helicobacter cinaedi PAGU611
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hcp03032
]
HCN_0871 (topA)
03400 DNA repair and recombination proteins [BR:
hcp03400
]
HCN_0871 (topA)
Enzymes [BR:
hcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HCN_0871 (topA)
DNA replication proteins [BR:
hcp03032
]
Prokaryotic type
DNA Topoisomerases
HCN_0871 (topA)
DNA repair and recombination proteins [BR:
hcp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HCN_0871 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
DUF7340
Motif
Other DBs
NCBI-ProteinID:
BAM12125
LinkDB
All DBs
Position
881319..883559
Genome browser
AA seq
746 aa
AA seq
DB search
MKDLIIVESPAKAKTIKHFLGDKYEVLASKGHIRDLPKYSFGIEIENQHFTPQYTISKDH
TEIVEKIKQAHKKAKTTYIATDEDREGEAIGYHITQALKRPYDEFPRIVFHEITKNAITH
SLQNPRKIDMARVNAQQARRLLDRIVGFKLSQLMNSKIQKGLSAGRVQSAALKIIVDRER
EIEAFKPTIYFNIGAIFATQGGEKNSDIESELIVYNQKLEKLSLQDSKVVEQMCENIKRE
QFYIKEITTKSKKTPTPPPFMTSTLQQSASSLLGYSPTRTMSIAQRLYEGVNTSFGTMGV
ITYMRTDSLNIAKEAKDSARELLLKTYGKEYVPTKTKNYSTKSKAAQEAHEAIRPTNLAF
TPQLAKDYLKPDELKIYTLIYNRFLASQSQDAVFETQNILFASNGANDEIVFKASGRKLV
FDGFYKIMGSDDKDKLLPECKQGQSVVLKEVKSEQKSTEPSPRYSEASIIKSMESLGIGR
PSTYAPTIALLVNREYVRVEKKQLVPQESAFKATAMLEENFNEIVDSHFSAGLEDKLDEI
AQEHIDWQVVLWDFYDPFIKKIESGKKNITSQKVSIPTGEMCPQCGKELVQRQSRYGEFI
ACSGYPKCKYIKPSETKPQENEQGDSKVYGECEKCGKPMVKKFGRNGEFIACSGYPKCKN
TKSLQNKAEPKSVEGVACPECGGEIVQRFSRRGAFFGCKNYPKCSFISKFQPIGDRCEKC
GGAMCEREYRKKQMHECLKCKDRVEI
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttaatcatcgtagaatcaccggctaaagcaaaaacaatcaaacatttttta
ggggataaatatgaagtccttgcatcaaaaggacatattagagatttgccaaaatatagc
tttggcatagagattgaaaatcagcatttcacgccacaatacactatcagtaaagaccac
actgaaattgttgaaaagataaaacaagcccacaaaaaagcaaaaacaacctacatcgca
accgatgaagatagagagggtgaggcgataggctaccatattacacaggctttgaagcgt
ccttatgatgagtttccgcgtattgttttccacgaaattactaaaaatgccattacgcat
tccctgcagaatcctaggaaaattgatatggcaagggtgaatgcacaacaggctagaaga
ctgcttgatagaatcgtaggctttaagctctcacaacttatgaactctaagattcaaaaa
gggctatcagctgggcgtgtgcaaagtgcggcgttaaaaattattgtggatagagaaagg
gagatagaagcttttaagccgacaatttatttcaatataggggcgatttttgccacacag
ggcggagaaaaaaatagcgatatagaatctgaactcatcgtgtataatcaaaagctagaa
aagctctcactccaagattctaaagttgtggagcagatgtgtgaaaatattaaaagagag
caattttacattaaagaaatcactacaaaaagtaagaaaacgcccacccctccgcctttt
atgacttctacattacagcagagtgcttcaagtctgcttggctactcgcccacacgcacg
atgagtatcgctcaaaggctttatgaaggagtgaatacgagctttgggacgatgggggtt
atcacctatatgagaacagatagtcttaatatcgctaaggaagccaaagattcagcaaga
gagctacttttaaaaacttatggcaaggaatatgtccctacaaaaactaaaaactacagc
acaaaatcaaaagctgcccaagaagcccacgaagctatccgccccacaaatctagccttt
actccgcaacttgccaaagactatttaaaaccagatgagctaaaaatctataccctaatc
tacaatcgcttccttgcttcgcaaagccaagatgcggtgtttgagacgcaaaatattctt
tttgcttcaaatggggcaaatgatgagattgttttcaaagcaagtgggcgaaaacttgtg
tttgatggattttataaaattatggggagtgatgataaggataaacttttgcccgagtgt
aagcaggggcaaagtgtagtgctaaaagaagttaaaagtgagcaaaaatccactgagcct
tcccctagatattccgaagcgagtattattaaaagtatggagagcctaggtatagggcgt
ccatcaacctacgcaccaacaattgccctgcttgtgaatagggagtatgtgagggttgaa
aaaaagcagcttgtgccgcaagagagtgcctttaaagccacagctatgcttgaagaaaat
tttaatgagattgtagattcgcattttagcgcagggcttgaagataagcttgatgaaatc
gcacaggagcatatagattggcaggtggtgctttgggatttttatgatccatttatcaaa
aaaatagaatctgggaagaaaaatatcacttcgcaaaaggtgagtatccccacaggtgaa
atgtgtccgcaatgtggcaaggaactagtgcagcggcaaagtcgctatggagaatttatc
gcgtgtagtggctacccaaaatgcaaatacattaagcctagtgagactaagccacaagag
aatgagcaaggggattctaaggtgtatggggaatgtgagaaatgtggtaagcctatggta
aagaagtttgggcggaatggagagtttatcgcgtgcagtggctatccaaagtgtaagaat
acaaaatcgcttcaaaacaaggcagagccaaagagtgtggagggtgtggcgtgtccggaa
tgtggaggggagatcgtgcagagatttagccgcaggggagcattctttggctgtaagaat
tacccaaaatgtagttttatctcaaagtttcagcctattggcgatagatgtgaaaaatgc
ggtggggcaatgtgcgaaagggaatatcgcaaaaagcaaatgcatgagtgcctgaaatgt
aaggacagagtggagatttaa
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