Helicobacter cinaedi PAGU611: HCN_0888
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Entry
HCN_0888 CDS
T02034
Symbol
xseA
Name
(GenBank) exodeoxyribonuclease VII large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HCN_0888 (xseA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcp03400
]
HCN_0888 (xseA)
Enzymes [BR:
hcp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
HCN_0888 (xseA)
DNA repair and recombination proteins [BR:
hcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HCN_0888 (xseA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
BAM12141
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All DBs
Position
899406..900659
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AA seq
417 aa
AA seq
DB search
MKALKVSELNTQIKAILEQTFLDVCVQGEISGVKVHTSGHIYLSIKDEDSNIKCVMFKGN
ARGLKITLEVGQSIVIMGSVSVYTQKGEYQILCKSITLAGVGEFALAFENLKNKLQTKGY
FESFHKKPMPKFPKRIALLTSATGAAKEDMLKVAQKRWNLVHITLFDTLVQGENAKECIV
ANLALADSFFGTKEGFDVIVLGRGGGSMEDMWAFNEECVAEAIYRAKTPIISAVGHEVDV
FISDFVADLRAPTPSAAMEMLLPDKFEFLRIIDEMMSAYSSVFERYLGQKQRLIGQLKEY
FKLYNFQSQYINKREQIQALGQIFVENFRNILEKKQGEIERVKMLIDVAFERKLTHAQME
CERLFEALKASNPRSLCKNGYAQISKEQKVCVLQDIAVNEVFELSDLDLHIFAKRVK
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctttgaaggtcagtgagctaaacacacagataaaagcgattttggagcagact
tttttagatgtgtgtgtgcaaggcgagattagcggtgttaaggtgcatacgagcggacat
atttatttaagcattaaagatgaggattcaaatatcaaatgtgtgatgtttaagggaaat
gcaagggggttaaagattacgcttgaagtggggcagagtatcgtcattatggggagcgtg
agtgtctatacacaaaaaggggaatatcagattctatgtaaaagcattactcttgcgggg
gttggcgagtttgccttggcatttgaaaatcttaaaaataagcttcaaactaagggctat
tttgaatcttttcacaaaaagcctatgccgaagtttcccaaacgcattgccctgctgact
tcagccaccggagcggcaaaagaagatatgctaaaagtggctcaaaaaagatggaatctc
gtgcatatcacgctttttgatacgctcgtgcaaggggagaatgctaaggaatgtattgta
gcaaatttagctttagccgatagcttttttggcacaaaggagggctttgatgtgattgtg
ctagggcgaggtggaggcagtatggaagatatgtgggcgtttaatgaagagtgtgtggca
gaggcgatatacagggctaaaacacccattatatcggctgtgggacacgaagtagatgta
tttattagcgattttgtagcggatttacgagcgcctacaccttcagcggcgatggaaatg
cttttgcccgataagtttgaatttttgcggattattgatgagatgatgagtgcgtattct
agcgtgtttgaaaggtatttggggcagaagcagagattgatagggcaactcaaggagtat
tttaaactctataattttcaatcgcaatatataaacaaaagagagcagattcaggctcta
gggcaaatatttgtggaaaattttagaaatattttagaaaaaaagcaaggagagattgaa
agggtaaaaatgcttatagatgtggcatttgaaagaaagctcactcacgcacaaatggaa
tgtgagcggctttttgaagccttaaaagcgagtaatccacgctcactatgtaagaacgga
tacgcacaaataagcaaggagcaaaaagtctgcgttttacaagatattgctgtaaatgaa
gtgtttgaacttagtgatttagatttgcatatatttgctaaacgcgtgaaatag
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