Helicobacter cinaedi PAGU611: HCN_1106
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Entry
HCN_1106 CDS
T02034
Symbol
oppD
Name
(GenBank) oligopeptide ABC transporter ATP-binding protein
KO
K13896
microcin C transport system ATP-binding protein
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
HCN_1106 (oppD)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hcp02000
]
HCN_1106 (oppD)
Transporters [BR:
hcp02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Microcin C transporter
HCN_1106 (oppD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
SMC_N
AAA_16
AAA_22
AAA_5
AAA_29
nSTAND1
nSTAND3
RsgA_GTPase
NACHT
oligo_HPY
AAA_7
Mg_chelatase
AAA_25
Sigma54_activat
ABC_ATPase
DUF87
DEAD
PRK
Roc
AAA_13
Alg14
Motif
Other DBs
NCBI-ProteinID:
BAM15038
LinkDB
All DBs
Position
complement(1125474..1127057)
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AA seq
527 aa
AA seq
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MLNISHLNAHFLHSTRFSLQDICLHIKPGEKVALVGESGSGKSMLAQLILNLNPHIALQS
GSVEFENKNLATLTQKELESLRGRDIAYIPQEPLSSLNPLHKVGKQIMESFYLHTNELYP
NLKGKALHNKSKERLAELLALIGLDSSLAHAYPFELSGGQKQRVAIAMSIVNNPKLLICD
EPTTALDVLVQRQIMELLSSLAKQSAIVFISHDLGVVREFADRVVVLKEGKIIESALSEK
LFNAPQHSYTRFLIESLRLPKRKALTQTSQDFTQQDIVLRAKDLSVGVKKQGFFTSTYKQ
ILSPLSFCLKKGQILGIAGESGSGKSSLALGLLHLLETKGELYLNERQVKRTKADVKLLR
KQISMVFQDPFSSLCPRFRVGDIIKEALGKLPNEAYREKIAWALEMTGLDSSLAHAYPFE
LSGGQKQRVAIARAIVREPKILLLDEPTTALDKSSQKLILTLLLELQEKMQVSYIFITHD
LEILRELSDEVLILHKGVAVEYGRSENVFETPQSVEARALIEAFFGK
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgctaaacatctctcatcttaatgctcattttctgcattctactcgttttagtttgcaa
gatatttgcttacacattaagcccggcgagaaagtggcgttagttggagaatctggctcg
ggtaagagtatgttagctcaacttattttgaatcttaatccgcatattgctttgcaaagt
ggtagtgtggagtttgagaataaaaatctagcgacactcacgcaaaaagagctagaatct
ctgcgtggcagggacattgcctatattccacaagagccgctttcaagccttaatcccctg
cataaagtcggcaaacaaataatggagagcttttatctccacactaatgagctttacccc
aatcttaagggcaaggcgttacacaacaaatcaaaagagcgactagcagagcttttagca
ttaatcgggctagattctagcttggctcacgcttatccctttgaactaagcggggggcaa
aagcaacgcgtagccattgctatgagtattgtgaataatccaaaattgctgatttgtgat
gagcctacgactgccctagatgtgctggtgcagcggcaaattatggagctactctcaagc
ctagccaagcaaagtgcgattgtgtttattagccacgatttgggcgttgtgcgtgaattt
gccgatagggttgtggtgttaaaagaaggcaagattatagaatctgctttgagtgaaaag
ctttttaacgccccacagcattcctatacgcgatttttaattgaatctttaaggctccct
aaacgcaaagctctcacacaaacaagccaagattttacacaacaagacattgtgctaaga
gccaaggatttaagcgtgggggtaaaaaagcagggatttttcacaagcacttataagcag
attctatccccattaagcttttgcctgaaaaaagggcagattctaggaatcgccggggaa
tctggcagtggcaagtctagccttgccctagggcttttgcatttacttgagacaaaaggg
gagttatatcttaatgaaaggcaggttaaacgcacaaaggcagatgtgaagcttttgcga
aagcagatcagtatggtgtttcaagatcctttttcttcactctgcccgcggtttcgtgtt
ggcgatattattaaagaagctttgggaaagctccccaatgaagcatatagggaaaaaatc
gcgtgggcgttagaaatgacagggctagattctagcttggctcacgcttatccctttgaa
ctaagcggggggcaaaagcaacgcgtagctattgctagagccattgtaagagagcctaag
attttgttacttgatgagccaacaaccgcccttgataaaagctctcaaaagctcatactc
acgcttttattagaactacaagagaaaatgcaggtgagctatatatttatcacgcacgat
ttggagattttgcgagagttgagtgatgaagtgctgattttacacaagggcgtggcggtg
gaatatggcaggagtgagaatgtgtttgaaactccgcagagtgtggaggcaagggctttg
attgaagcattttttggtaaataa
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