Helicobacter cinaedi PAGU611: HCN_1302
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Entry
HCN_1302 CDS
T02034
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HCN_1302 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hcp03400
]
HCN_1302 (mfd)
Enzymes [BR:
hcp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HCN_1302 (mfd)
DNA repair and recombination proteins [BR:
hcp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HCN_1302 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
BAM12512
LinkDB
All DBs
Position
complement(1316579..1319623)
Genome browser
AA seq
1014 aa
AA seq
DB search
MIQSCLYRLLHQGQFAYEILLTKDYKEAQSALELFRFNGEITPFILPEMRFVYGDDLSAF
REEFLESLSVLRLFYAAKSPKILISPISSVLYALPKAEILQSFELKQSVIYKMPELQKRL
LEYGYECVEVVELEGEVSFRGDIIDIFMPHCESPYRIVFFDDEIESIREFDIHTQLSNPN
EINSLEITPALFCLNEKQNKDIQENVAQSTFDGFHKDIASFGFWFLNENAHFLPLNFKTI
LSPESLQEAQESYSLNTMEQAISFESLQQLPILESQQGYDDIVFLPQNLPSMLQAHTKRQ
ITIITHNDIKLKAFDVDIKSFENVKIKHSTAVVNLITPSELIVSLNTFTPKIKHKKPTLK
LNEISQGEYVVHNDYGVGIFQGIKQAQVAGVVRDFIEIAYQGEDKLLLPVENLNMIDRYV
ADSGQIPMLDRLGKGSFAKLKQKVRTKLLEIANGIIELAAKRNLLQGVKIDTDNPKLLHF
QSTCGFTLTKDQERSIKEIYADLSSGKVMDRLLSGDVGFGKTEVAINAIYATILSGFQAM
MIVPTTLLSAQHFHSLQMRLAPHNIRIARCDRFLKANEKKKLFESLEKGEIEVVVGTHAL
LGARFKNLGLIVVDEEHKFGVKQKEKIKELCANTHLLSMSATPIPRTLNMALSQIKSLSS
LQTPPMARIPVRTFIKTSNNALLKEIILREIRRGGQVFYIHNNIASIEKRAKELQQILPQ
IKIAILHSQVENAKSEEIMLDFANNAYNVLLCTSIVESGIHLPNANSIIIARADRFGIAD
LHQLRGRVGRGDKQGFCYFLLEDMQEITPEAKKRLSALEKNSYLGSGENLAYYDLEIRGG
GNLLGEAQSGHIKNIGYGLYLRMLEECINYLSGKGNITQAQCDLKLSLNAYLNPTLIASD
TLRLELYRRLSLCENLQEVSEIESEIFDRFGKLDDVSLAFIELIRIKVLANALGLKQIMH
YGQNITFTFMDSTKQSIQAPSKDWDDVLMSIMNFLRENLKRQNNGVKMEIKNGV
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
ttgatacaatcttgcctgtatagacttcttcatcaagggcaatttgcttatgagattcta
ttaacaaaggattataaggaagcccaaagtgccttagagctttttagatttaatggagaa
attacgccttttatcttgccggagatgcgttttgtctatggcgatgatttaagtgcgttt
agggaagaatttttagaatctttaagcgtattgcgacttttttatgcggcaaaatcgcca
aagattctcatctctcccatctctagtgtattgtatgccttgccaaaggcagagattttg
cagagctttgagcttaagcaatccgtaatctataaaatgcctgagctacaaaaacggctc
ttagaatatggctatgagtgcgttgaggttgtggagctagaaggggaggtgagctttaga
ggcgatattattgatatttttatgccccattgtgaatctccttatcgcattgtgtttttt
gatgatgagattgaaagtatccgcgagtttgatattcatacgcagttaagtaacccaaat
gagataaatagccttgagattacacctgcccttttttgcttaaatgaaaagcaaaataag
gatatacaagagaatgttgcccaaagcacatttgatggttttcataaggatattgcttca
tttggattctggtttttaaatgaaaatgcacattttttgcctttaaattttaaaacaatt
ctatctcctgaatctttgcaagaagcacaagagagctactcgcttaacacaatggagcaa
gcaataagctttgaatctttacagcaactgcctatcttagaatcacagcaaggctatgat
gatattgtattcttaccccaaaatcttccttcaatgcttcaagcccacactaaaaggcaa
atcacaatcattacgcataatgatattaaactcaaagcctttgatgtagatataaaaagt
tttgaaaatgtcaaaattaagcattcaactgcggtagtcaatctcatcacgccaagtgag
ctgattgtatcgcttaatactttcacaccaaaaatcaagcacaaaaagcccacattaaag
cttaatgaaatctcgcaaggcgaatatgtcgtgcataatgactatggtgtggggattttt
caggggataaaacaagctcaagtagccggtgtggtaagagattttattgaaatagcctat
cagggcgaggataagcttttactgccggttgaaaatctcaatatgattgatagatatgtg
gcagattcagggcagataccaatgctagataggctgggcaaggggagctttgctaaatta
aagcaaaaggtaagaacaaaactactagaaattgccaatggcattattgagcttgcggca
aaacgcaaccttttgcaaggggtgaaaattgatacagataatcccaagcttttacatttt
caaagcacttgtggatttacccttacaaaagaccaagagcggagtatcaaagagatttat
gcggatttaagctcgggcaaggtgatggataggcttttgagtggtgatgtgggctttggc
aagacagaagtagcgataaatgccatatatgctactattttatcaggctttcaagcgatg
atgattgtgcctacaacgcttttatctgcacagcattttcattccttacaaatgcgttta
gccccacataatatccgcatagcaaggtgcgatagattcttaaaagcaaatgagaaaaaa
aagctttttgaatctttggaaaaaggcgagatagaagtcgttgtcggcacacacgcattg
cttggggcgagatttaagaatcttgggttgattgtggttgatgaagagcataaatttggg
gtaaaacaaaaagaaaagattaaagagttatgtgccaatacgcatttgctaagtatgagt
gctacgcctattcccagaacgctcaatatggcactttcacagattaagtctcttagctcc
ttgcagactccccctatggctagaatccctgttaggacttttatcaaaacgagtaataat
gcgttgctaaaagagattatcttgcgtgagataagacgcggtgggcaagtgttttatatc
cataataacatcgcaagtattgaaaaaagagcaaaagagttgcagcagattctcccacag
attaaaattgctattttgcattcacaagtggagaatgctaagagtgaagagattatgctt
gattttgccaataacgcttataatgtgctactttgcacaagcattgtagaatctggcatt
cacctgcctaatgctaatagtattatcattgctcgggcagataggtttggtatagcggat
ttacatcagctacgcggacgcgtggggcgtggggataaacaaggcttttgttactttttg
ctagaagatatgcaagaaatcacgcctgaagctaaaaagcgtttgagtgcgttggagaaa
aattcctatcttggcagtggggaaaatctcgcctattatgacttagaaattcgcggtggt
gggaatctgctaggagaggctcaaagtgggcatattaaaaatatcggctatgggctgtat
ttgcgtatgttagaagagtgtattaattatcttagcggcaaggggaatattacacaagca
caatgtgatttaaaactcagtcttaatgcctatcttaaccctactttaatcgcaagtgat
actttgcgtttagagctgtatcgccgcctttcactttgtgaaaatctacaagaagtcagt
gagatagaatctgaaatctttgatagatttgggaagcttgatgatgtgagtttggcattt
attgagcttatacgcattaaggtgttggcaaatgcgttaggcttaaagcagattatgcac
tatgggcagaatattacctttacttttatggatagcacaaagcagagtattcaagcacca
agcaaggattgggacgatgtgcttatgagtattatgaattttttgcgtgagaatcttaaa
aggcaaaacaatggggtaaaaatggagataaaaaatggcgtgtag
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