Helicobacter cinaedi PAGU611: HCN_2065
Help
Entry
HCN_2065 CDS
T02034
Name
(GenBank) putative metallo-beta-lactamase family protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
hcp
Helicobacter cinaedi PAGU611
Pathway
hcp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HCN_2065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcp03019
]
HCN_2065
Messenger RNA biogenesis [BR:
hcp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HCN_2065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
PLCC
Motif
Other DBs
NCBI-ProteinID:
BAM13209
LinkDB
All DBs
Position
2043931..2046069
Genome browser
AA seq
712 aa
AA seq
DB search
MEDKKMQEKETMEKKTPEQSSQVSRFSKFTDRFKKKSPEEQANDMTSDSTESSQNQAKNF
HNRFKQRDSKNYANTQGNAQTDTQSNTNQGQKNFEKRRWQGKNPHAQHNKAQNDESINGI
REVRDVNEKGNLGLHKDLKRGVEANEKIQRQSLNAHNKLNLNTKASVRITPLGGLGEIGG
NITVIETQDSAIVIDVGMSFPNEDMHGVDILVPDFSYLFAIKDKIAGVIITHAHEDHIGA
VPYLFKLLQFPIYGTPLPLGMIGSKFDEHGLKKFRSFFKIVEKRKPIKIGAFEVEWINIT
HSIIDASALAIRTEAGVIIHTGDFKIDHTPVDNLPTDLHRLAHYGEEGVMLLLSDSTNSH
RSGVTPSEASVGPTFETLFKQAQGRVIMSTFSSNIHRVYQAITHGLKYNRKVAVIGRSME
KNLELARELGYIDLPQNIFIEAHEVEKYPDEEVLIVTTGSQGETMSALYRMATDEHRHIK
IKPSDMVIISAKAIPGNEGSVSTVLNFLMKAGAKVAYQDFSEIHVSGHAAQEEQKLMLRL
VKPKFFLPVHGEYNHIARHKQTAIACGVMEKNILLMEDGDQIEVNPNYMKKIRSVKNGKT
FIDNQINRQIENDVVLDRQALASDGIVIISAKISKDRKILETKITSYGLVADKEDKGFEK
EMNDTLEFVVKNFKVEGFNAKNLENEVHNTFKRHIFKKVKKYPTIVPMIYVI
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaagaaaatgcaggagaaagaaacaatggaaaaaaaaacaccagagcagagc
agccaagtcagcagattcagtaaattcacagatagattcaagaaaaaaagcccagaggaa
caagccaatgatatgacttcggattctacagaatctagccaaaatcaagcaaagaatttt
cacaatcgcttcaagcaaagagattctaaaaattacgcaaacacgcagggcaatgcacaa
actgacacgcaaagcaatacaaatcaagggcaaaaaaactttgaaaaaagacgatggcaa
ggcaaaaatccccacgctcaacacaacaaagcccaaaatgatgaaagcataaatggaatc
cgcgaagtaagagatgtaaatgaaaaaggcaatctaggcttacacaaagatttaaaaagg
ggtgtggaagcaaatgagaaaatccaacgccaaagccttaatgcccacaacaagcttaat
ctcaacacaaaagcaagtgtgcgtatcacaccacttggtgggcttggcgaaattggtgga
aatatcaccgtgattgaaacacaagattcagctatcgtcattgatgtgggtatgagcttc
cctaatgaagatatgcacggcgtggatattctcgtgccagattttagctatctttttgcg
attaaagacaaaattgctggagttatcatcactcacgcacacgaagaccatataggtgct
gtgccttatctttttaaactcttacaattccctatctatggcacaccactgccacttggt
atgataggcagcaagtttgatgagcacgggctaaaaaaattccgctcatttttcaaaatt
gttgaaaaacgcaaacccataaagatcggtgcatttgaagtagagtggattaatatcacg
cattccattattgatgcttccgcccttgccatacgcacagaagcaggtgtgattatccac
accggcgattttaagatagaccacacccctgtggataatctccccaccgatttacaccgc
ctagctcattatggagaagaaggcgttatgctcttacttagcgattctacaaactcccac
cgcagcggagtaacgcccagcgaagcaagtgtaggaccgacatttgaaacattattcaaa
caagcccaagggcgtgtgattatgagcacattctcttcaaatattcatcgcgtgtatcaa
gccataactcacgggctaaaatacaaccgcaaagtcgccgtcattgggcgatcaatggag
aagaatcttgaacttgctagagagctaggctacattgacttgccgcaaaatatttttatt
gaagcacacgaagtggaaaaataccccgatgaagaagtattgattgtaacaacaggctct
caaggcgagacaatgagtgcgttatatcgtatggcgacagatgagcataggcatattaaa
attaagccaagcgatatggtgattatctctgctaaagccattccgggcaacgaaggctct
gtttccaccgtgcttaatttccttatgaaagccggagcgaaagtggcttaccaagacttt
agcgagattcacgtaagcggacacgccgcacaagaagaacaaaagctaatgctacgactt
gtgaagccaaaattctttctgccagtgcacggagaatacaatcacatcgctagacataag
caaactgccattgcttgtggggtaatggagaaaaatatcctgcttatggaagatggcgat
caaatagaagtcaatcccaactatatgaaaaaaatccgcagtgtcaaaaatggcaaaaca
tttattgataatcaaatcaaccgccaaattgaaaatgatgtcgtgcttgacagacaggct
ttagcaagtgatggcattgtgattatttcagctaaaattagcaaagatcgcaagattttg
gagacaaaaatcacaagctacggacttgtagcggacaaggaagataaaggctttgaaaaa
gagatgaatgacacacttgaatttgtggtgaaaaacttcaaggtagaaggctttaatgcg
aagaatcttgaaaatgaagtgcataacacattcaagcgacatattttcaaaaaagtcaaa
aaatatccaaccattgtgccgatgatttatgtcatctaa
DBGET
integrated database retrieval system
