Hippocampus comes (tiger tail seahorse): 109506993
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Entry
109506993 CDS
T04969
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04382
Cornified envelope formation
hcq04510
Focal adhesion
hcq04512
ECM-receptor interaction
hcq04518
Integrin signaling
hcq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109506993 (col4a5)
04518 Integrin signaling
109506993 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109506993 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109506993 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
109506993 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcq04147
]
109506993 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109506993 (col4a5)
Exosome [BR:
hcq04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
109506993 (col4a5)
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109506993 (col4a5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
109506993
NCBI-ProteinID:
XP_019711649
LinkDB
All DBs
Position
Unknown
AA seq
1688 aa
AA seq
DB search
MSKEAKRLPRLAVPLLLLALCAAVQRTDSAACHGCAGSKCDCSGVKGEKGERGFPGLTGQ
PGVPGFPGPEGPIGSRGEKGSDGPMGLGGPKGIRGPPGLPGFPGTPGLPGLPGQDGAPGP
RGTPGCNGTKGEIGFPGTSGIPGQQGLPGPPGLPGQKGDPGDVISTNRFGEKGAVGFPGL
PGVPGPPGPAGYQGPVGAPGPRGFEGRPGPPGPPGPKGNMGLNFQGPKGEKGDPGLPGPA
GPPGQVGEQKRPTETEIQRGDKGDPGLPGPPGDPGYPGPPGIPGGQKGEKGEPGEAGKRG
KPGKDGDPGPPGFLGLKGEPGLPGPAGRDGERGMKGERGFPGAPGVVISGQTGAQVGPKG
EPGFPGSPGIKGDRGPSGLPGPPGAPGIPGGGGGGSSGQPGFPGERGQKGDTGSPGLSLP
GPPGRPGGPGLQGPPGAPGPPGFSSGGQNCIPGNPGRAGLPGERGYPGEAGQKGEKGDTC
VNCFSGGSGIPGPPGPAGQPGFPGNPGGQGIKGERGFPGTPGQSGPPGLPGSQGPPGFPG
EKGEPGEAITGGGARGEKGDTGFPGPPGLPGLDGRPGRDGQPGLPGPKGAPGSLQVRGDR
GSPGDPGPPGIAGDRGPPGPPGFGPPGLPGEKGIQGVSGRPGSPGIPGAKGEPGLTVAEK
GQPGPRGLDGEPGLPGAPGNSGQPGQPGFPGLPGAKGDPGLPGIGLPGPPGPKGFPGVPG
QPGAPGGLGRPGVDGLPGQPGFPGAKGEPGFGLPGPPGLPGVPGAKGITGPKGDPGFPGS
PGSPGRSGFDGAPGSKGEPGTSGIPGARGPPGPPTAGSRGPPGAPGLPGPMGSPGFPGGN
GAKGDPGPPGLDIPGLPGDRGSPGFPGSPGPVGTPGPPGGPGRDGLPGLPGAKGDMGPIG
APGPAGGPGGPGGPGAPGLKGEPGFPGRDGVPGSSGIKGERGSSGPPGAPGYSPPPLSSK
GDKGEPGLPGAPGFPGQKGIPGISGDPGLPGSDGRPGLPGPSGPKGDPGIPGGPGGPGAP
GLKGSMGEMGFPGPSGQKGLPGQPGRPGSPGQPGGPGFSGAKGEPGSAGVGPPGPPGIKG
DPGQSGFPGSPGPKGTPGLPGLPGLPGGPGAKGDQGPPGFQGTPGIPGPKGLDGGPGGPG
LTGAPGRPGEPGRPGGPGFPGDKGQPGRDGIPGPAGVKGEPGLPGYGEPGAPGLPGLPGA
KGDPGPAGPSGSPGFPGPKGEGGFPGLPGSPGPIGPPGPAGLALQGPKGLAGPPGPPGRS
GPSGPAGVPGPQGPRGPPGSGGIRGEKGIPGAAGQPGFPGQKGDPGVPGFSGAPGPPGVP
GAKGDIGLPGVPGFPGPKGDPGLSGASGLPGDPGDVGPPGLPGDPGFPQPPIVVKGERGP
PGPLGQPGTGGLPGSPGREGSPGLPGDSGDPGPEGPPGFSGPPGRKGDNGPAGQPGQRGY
PGPPGSDGPQGPPGLPGSGSAAHGFLITRHSQIQEVPLCPVGTNLIYDGYSLLYVQGNER
AHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGESI
KPFISRCSVCEAPAMVIAVHSQTIQIPNCPANWEALWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVDEGEMFSKPQSETLKAGNLRTRVSR
CVVCMKRT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaagaggcgaagaggctgccacggctcgcggtgccgctgctgctgctcgccctg
tgcgccgccgtgcagcggacagactcggcggcttgccatggatgtgcaggatccaaatgt
gactgcagtggagtcaaaggagagaagggtgagagaggtttcccagggcttaccggacaa
cctggagtgccgggattcccgggacctgaagggccaatcggatcccgcggagagaagggt
agtgatggacccatgggcttgggtggcccaaaaggaataagaggacctcccggtttgcca
ggattcccaggaacaccaggacttccaggtcttccagggcaggatggagctccaggccca
agaggaacgccaggatgcaatgggacaaaaggtgaaatcggcttcccgggaacatctgga
ataccaggacaacaaggactaccgggtccacctggtcttcctggtcagaagggtgatcct
ggtgacgtgatctctactaatcgctttggggagaaaggagctgtaggatttcctggactg
ccaggagtacctggtcctccagggcctgccgggtaccaaggtccagtcggcgctccagga
ccgagaggctttgagggtcgaccaggtcctcctggtcctcctggacctaagggaaacatg
ggactgaacttccagggacccaaaggagagaagggcgaccctggtttaccgggccctgct
gggccaccggggcaagtcggggaacagaagaggccaactgagacagagattcaaagagga
gacaagggtgacccaggacttccggggcccccaggtgatcccggctatccaggtccccct
ggtatccctggtggccagaaaggagaaaagggagaaccgggagaagcaggcaaacgtggc
aaaccaggcaaagatggtgaccctggtccaccaggcttccttggtctcaaaggagagcca
ggcctgccaggtcccgctggcagggatggagagagaggtatgaaaggtgaacgtggattc
ccaggtgctccaggagtggttattagtgggcagacaggagcacaggtgggtccgaaaggc
gagcctgggttccctggatcacctggcatcaaaggagacagaggaccatcaggtttacca
ggacctcctggagcgccaggaattccaggtggtggcggaggtggttcatctggacagcca
ggcttcccaggagagagaggtcagaagggagacaccggcagtccgggtctctctcttcct
ggtcctccgggccgccctggaggacctgggctgcaaggaccaccaggggcccctggacct
ccagggttttccagcggtggacaaaactgtatccctggcaatcctggacgtgccggccta
ccgggagagagaggttacccaggagaggcgggccagaaaggtgaaaagggtgacacctgt
gtcaactgctttagtggcggaagtggtatcccgggacctccaggtcctgcaggacaaccg
ggattcccaggaaatcctggcggccaaggtattaaaggagaaagaggattccctggaaca
cctggccaaagtgggccacctggtctgcccggttctcaaggtcctccaggattcccagga
gagaagggagagccaggtgaagctatcactggaggcggcgcgaggggtgagaagggtgac
actggattccctggaccacctggtcttccaggtctagatgggcggcccggtcgcgatggg
cagcctggtcttccggggcccaaaggagctcctggatctttgcaggtgagaggagaccga
ggtagccctggtgatccaggtccccctgggatcgcaggagaccggggccctccaggaccc
cccggctttggacctcctggactccccggagaaaagggtattcagggtgtctcgggaagg
cctggatctcctggtatacccggtgccaagggtgagccaggcttgacagtggcagaaaaa
ggccagccgggacccagaggtctggatggcgagccgggtcttccaggtgcaccaggaaac
tcagggcagcctggtcagcctggtttccctggattaccaggagccaagggtgatcctgga
ctgcccggtattggactccctggaccccctggacctaaaggatttcctggtgtccctggc
caacctggagctccgggaggactgggtagaccaggagtagatggccttccaggccaacct
ggatttcctggagcaaagggtgaacctggcttcggcctcccaggtccaccaggtttacca
ggtgtacctggagctaaaggcataactggacccaagggagatcccggtttccctggaagc
cctgggtctccagggcgatctggatttgacggcgcaccaggatcaaaaggtgaaccagga
acatctggtatccccggagctcgtggtccaccaggacctccgacggcaggctcacgcgga
cccccaggggcccctggactcccaggtccaatgggctcacctggattccctggagggaat
ggagcaaaaggagaccctggacccccaggtttagacattcccggcttgccaggagataga
ggaagtcctggtttccccggttccccaggaccagttggaaccccaggacccccaggaggg
cctggacgggatggccttcctgggctgccaggtgccaaaggagacatgggtcccattgga
gctcctggaccagctggaggacccggtgggcctgggggacctggtgctcctggtttgaaa
ggtgaacctggattccctgggagagatggtgttcctggttcttctggaatcaaaggagaa
aggggtagtagtggcccaccgggagctcctggatacagcccaccacctttgtcttcaaag
ggtgataaaggagaaccaggactaccaggagcaccaggttttccgggccaaaaggggatc
cctggtatctctggtgaccctgggcttccgggatcagatggacggccaggacttcctgga
ccatcaggaccaaagggagaccctggcattccaggaggaccaggtggtcctggagctcct
gggctaaaaggcagcatgggagaaatgggatttccaggaccgtcaggacagaagggtttg
ccaggacagccaggtcgacctggatcaccaggacagcccggaggacctggtttctcagga
gccaaaggggaaccgggttctgctggagttggtccacctggaccacctggaatcaagggt
gatccaggccagtccggtttccctggaagtccagggcctaaagggactccaggtttacca
ggcctgccaggattacctggaggaccaggtgccaaaggtgatcaaggtccaccaggattt
caaggaacccctggtattcccggtccaaagggtctcgacggtgggcccggtggcccaggc
ctgactggagctcctggccgaccaggagagcctggccgaccaggaggaccgggattccca
ggagataagggtcaaccgggtcgggatgggatcccagggcctgctggcgtcaaaggagag
ccagggctcccaggctatggtgaaccaggagcccctggacttccaggactcccaggtgcc
aagggagaccccggtcctgccggcccatccggcagtcccggtttccctggtcccaaaggt
gagggtggcttccctggccttccgggttctccaggccctatcggccctcctggacctgca
ggtctggctctacagggtcccaaaggattagcaggaccccctggaccaccaggaagatca
ggtccatcaggtcctgcaggtgtgcctggcccacaaggccctcgtggtcccccaggaagt
ggtggcattaggggagagaaaggtattcccggtgctgccggccagccaggcttccctgga
cagaaaggagaccccggcgttccaggattctcaggtgcgcccggccctcctggtgttccc
ggcgcaaagggtgacatcggtctgcctggagttcccggattcccgggaccgaaaggagac
ccaggactttccggtgcctccggccttcccggtgaccctggagatgtcggaccgccaggg
cttcctggtgaccccggttttcctcagccccccattgtggttaagggagagcgtggaccc
cccgggcctctgggccagccgggtactggggggctgccaggctcccccggacgtgaaggg
tccccaggtctgccgggtgactcaggagatcctggtccagagggtccccctggattcagt
ggcccccctggaaggaagggagacaacgggcctgctggtcagcctggtcagcgtggctat
ccgggtcctcccggttccgacggtccgcagggtcctcctggtcttccgggctcgggctcg
gcggctcacggcttcctcatcacccgacacagtcagatccaggaagtacccctctgtccg
gtcggaaccaacctcatatacgatggctactccctgctgtacgtgcagggcaacgagagg
gcacacgggcaagacctcgggacggcgggcagctgcctgcgccgcttcagcaccatgccc
ttcatgttctgcaacatcaacaacgtgtgcaacttcgcctcccggaacgactattcctac
tggctgtccacgcccgaacccatgcccatgtccatggcccccatcaccggcgagagcatc
aagccgtttatcagccgatgctcggtgtgtgaggctcctgccatggtgatcgcggtccac
agccaaaccatccagattcccaactgtcccgccaactgggaggctctctggatcggttac
tccttcatgatgcacaccagcgccggtgccgagggctctggccaggccctggcctcccct
ggctcttgtctggaggagttccgcagcgctcccttcatcgagtgccacggcagggggacg
tgcaactactacggcaactcctacagcttctggttggccacagtggacgaaggcgagatg
ttcagcaaaccccagtcagagacgctgaaggcgggcaacctgcggacacgcgtcagccgc
tgcgtggtctgcatgaagaggacgtaa
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integrated database retrieval system
