Hippocampus comes (tiger tail seahorse): 109507024
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Entry
109507024 CDS
T04969
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109507024 (col25a1)
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109507024 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
109507024
NCBI-ProteinID:
XP_019711699
LinkDB
All DBs
Position
Unknown
AA seq
704 aa
AA seq
DB search
MERGASAGNMDEKVAPRRRAASVIPSLCSVASIAFCVVLSIHAADVRRRLAGLERGVDAS
TRAPADDLDALIAQKVNEMLSQRSYEQFVKIRSARQASPECNCPPGPPGKRGRRGRNGEP
GPPGPPGPKGQKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPPGPP
GPPGPRGPPGDTGKDGSVPGSFGDQGNPGEIGPVGPEGPPGLKGSLGPPGIPGVDGLKGD
LGIPGLDGIPGAKGEMGERGEKGDMGEEGPKGEIGEKGDAGSSAAGIKGEPGEPGRSGHK
GEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGEHGPPGKGERGDLGPVGPKG
SQGEAGTPGPKGSKGESGDKGDFGPSGPKGPPGQKGDQGATEIIDYNGNIQEALKKITTL
TVTGPPGPPGPVGPHGMKGDRGMPGLPGLDGERGYKGSKGDMGMPGASGDKGATGLPGLP
GVNGVKGDKGDSGLPGPQGSSIIGPPGAPGPHGPPGPMGPHGFPGPKGEPGLHGTKGARG
EPGHKGDRGPLGLPGASGLDGKPGIRGTDGPSGPAGPAGPKGDRGERGAAGDPGPRGPYG
LPGAAGTPGLDGLPGLRGEKGDSGERGEKGFRGFKGEKGEPGQPGLDGLDAPCQLVQYSS
LSSTTRPHACRSPSAIKHVHSTRMCSHFLICHMCTNTHCIRLTS
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggagcgtggagcgtccgcggggaacatggacgagaaagtggcccctcggcgtcgggcc
gctagcgtcataccgtcgctgtgctccgtggcgtccatcgccttctgcgtggtgctcagc
atccacgcagcagacgtcaggcgccggctggctggcttggagcgcggtgtggacgcgtcg
acgcgcgcaccggccgacgatttggatgcgctgattgcgcaaaaagtcaacgagatgctc
tcccagcgttcttatgagcaatttgtcaagatacggagcgctcggcaagcatcacctgaa
tgcaactgtccaccaggacctccgggaaagcgaggaaggagaggccgcaacggagaacct
ggacctcctggccctcctggtccgaaaggtcaaaagggggatcaaggcgaccagggacca
cggatggtcttccctaagatcaatcacggctttctttccgctgaccagcagctcataaag
cgacgtctcattaagggagaccaggggcaagcaggaccacctgggcctccggggcccccg
ggtcctccgggcccacgggggccaccaggggacacgggcaaagacggctctgtgccggga
agctttggtgatcaagggaatccaggagaaataggacctgtgggacctgaggggcctcca
ggactcaagggttcactggggcctcctggtattccaggtgttgatggactgaagggggat
cttggcatcccgggactggacggcatccccggagccaagggtgaaatgggagagcgaggt
gaaaagggcgatatgggggaagaaggaccaaaaggggaaatcggtgagaagggggatgca
ggctcctcggcggcaggcattaagggcgaacccggagagcccggaagaagcggacacaag
ggagagccaggacttccagggctgcctggactgccaggaattaagggagagccaggattc
ctcggtccccaaggagagccaggcctcccaggccttccaggaactaagggggaaaggggt
gagcatggaccgcccggaaaaggtgaaagaggcgacctgggacctgttggaccaaagggt
tcgcaaggagaggcaggcacacctggtcccaaagggtcaaagggcgaaagtggagacaaa
ggagactttgggccttcagggccaaagggcccgcctgggcaaaaaggagaccagggggcc
actgaaattattgactacaatgggaacattcaggaagcgttgaagaagattaccactctt
acagtgacgggcccgccgggtcctcctggacctgtaggaccgcacggtatgaagggtgac
cgtggtatgcctggcctaccaggacttgacggagaacgcggctacaagggttccaaggga
gacatgggaatgcctggagcatcaggcgacaaaggagcaaccggtttacccggcttacct
ggcgtcaacggggtaaagggagacaagggagattcaggtctgccgggtcctcaaggctcc
tcaattattggccctccgggggcaccaggacctcacgggccccctggacccatgggaccc
cacggtttccccggaccaaagggtgaacccggtttgcacggtacaaagggggcacgcgga
gaaccaggccacaagggagaccgaggaccattaggtctccctggagcctccggcttggac
ggcaagcccgggattaggggcacagacgggccttcaggtccagctggtcctgccggccca
aagggggacagaggcgagcgaggggcggcgggggacccgggaccgaggggaccctacgga
ttacctggagcggcaggaacaccgggcttggatgggttgccgggtttgagaggagagaaa
ggcgacagtggggaaagaggagagaagggtttccggggatttaagggtgaaaagggggaa
ccagggcagcccggtctggacgggctggatgccccgtgccaattggtacagtattcctct
ctttcctccaccactcgccctcatgcatgtcgctcgccttcagccatcaagcacgtgcac
agcacacgcatgtgcagccattttctcatttgtcatatgtgcaccaacacccactgcatc
cgactaacttcttga
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