Hippocampus comes (tiger tail seahorse): 109507041
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Entry
109507041 CDS
T04969
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109507041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcq03041
]
109507041
03009 Ribosome biogenesis [BR:
hcq03009
]
109507041
Enzymes [BR:
hcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
109507041
Spliceosome [BR:
hcq03041
]
Complex A
U2 snRNP components
U2 related factors
109507041
Complex B
109507041
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
109507041
Ribosome biogenesis [BR:
hcq03009
]
Eukaryotic type
90S particles
Helicases
109507041
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
ResIII
SRP54
AAA_23
AAA_30
AAA_7
Flavi_DEAD
AAA_29
T2SSE
ATPase
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
109507041
NCBI-ProteinID:
XP_019711741
LinkDB
All DBs
Position
Unknown
AA seq
713 aa
AA seq
DB search
MMRRDKDRCRGVDEQSRAGSCVQRGETETDRSQTAMQEHINPFTQLPYTARYYQILKKRQ
QLPVWDYRENFTHILMHHQCFLIVGETGSGKTTQIPQWCVETFQSTGEAKRAVACTQPRR
VAAMSVARRVADEMDVTLGQEVGYSIRFEDCSSTKTVLKYLTDGMLLREAMSDPWLEHYA
VIVLDEAHERTLATDVLLGVLKRVLRQRSDLKVIVMSATLDAGKFQAFFDGCPLLSIPGR
THPVEVFYTPEPERDYLEAAVRTVVQIHMCEEDQGDILLFLTGQEEIEEACKRIKAEVND
LGPDAGEVKIIPLYSTLPPLQQQRIFESPPANKPNGAIGRKVVVSTNIAETSLTIDGIVF
VIDPGFAKQKVYNPRVRVESLLVSAISKSSAQQRMGRAGRTRPGKCFRLYTEKTYRTEMQ
DNAYPEILRSNLGSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNHLEALDDDGEL
TGLGAVMAEFPLDPQLAKMVVTSCELGCSDEALSITAMLSVPQCFMRPPEAKKAADDAKM
RLAHPDGDHLTLLNVYLAFQQSHRSSQWCYDNFVSYRSLMAADSVRLQLDRIMEQSGLPR
RTCDGDDVHIRRMLLTGFFMQVAHLERSGHYLTVKDKQVVQLHPSSVLGRKPEWLLYGEY
VLTAKNYIRMCTRIHPQWLLEIAPRYYEMSNFPPCEAKRELQRINGELSSKQL
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcgtgacaaggacaggtgccgaggtgttgatgagcagtcaagggctggctcc
tgtgttcagcgtggagaaacggagactgaccgaagtcaaaccgccatgcaggagcacatc
aacccgttcactcagctgccctacacagctcgatactaccagattctcaagaaacggcag
cagctccctgtgtgggactaccgagagaatttcacacacatcctgatgcatcaccagtgt
ttccttattgtaggagagaccggctctggaaagactacacagatcccccagtggtgcgtg
gaaacgtttcagtccacgggggaagccaagcgggcggtggcctgcacccagcccaggcgg
gtggcggccatgagcgtcgcccggagggtggccgacgagatggatgtcacgctgggccaa
gaagtggggtactccatccgctttgaggactgcagctctaccaagaccgtactcaagtac
ttgacggacggaatgctgctgcgggaggccatgagcgacccgtggctggagcactacgcc
gtcattgttctggatgaggctcacgaacgcacgctcgccacagacgtccttctaggcgtc
ctcaagcgggtgctccgccaaagatcggacctcaaggtaatcgtcatgagcgccacgctg
gatgcaggcaagttccaggcattctttgacggctgcccgctgctgtccatccccggacgc
acgcaccccgtggaggtcttctacacgcccgaacccgagcgtgactacctggaggcggcc
gtccgcaccgttgttcaaatccacatgtgcgaggaggaccaaggggatattttactgttc
ctcaccgggcaagaggaaatcgaggaggcctgcaaacgcatcaaggcggaggtcaacgac
ttgggacctgacgccggcgaggtgaaaattatcccgctgtactccacactgccgccactg
caacagcagagaatcttcgagtcgcctccggccaataaacccaacggtgccatcggaagg
aaggttgtcgtgtcaaccaacatcgctgagacatccctcaccatcgatggcatcgtgttt
gtgatcgaccctgggtttgccaagcaaaaggtgtacaaccctcgcgtccgagtggagtcc
cttctggtatccgccatcagcaaatcgtcggcgcaacagaggatgggccgagccggacgc
acgcgtcccgggaagtgcttccgattgtatacggaaaagacctacaggacagagatgcag
gacaacgcctatccagagatcctcaggtccaatctgggctcaacggtgctgcaactgaag
aagttgggaatcgacgacctggtgcattttgacttcatggatccaccagcccctgagacg
ctgatgcgggctttggagctgctcaaccacctggaggccctggacgacgacggcgaactg
acgggtctgggcgccgtgatggccgagttcccgctggatccgcagctggccaagatggtc
gtcaccagctgcgagttggggtgctctgacgaggcactctccatcaccgccatgctgtca
gtcccgcagtgcttcatgcgacctcctgaagccaaaaaggcggccgacgatgccaagatg
cgactggcccacccagacggagaccacctgactcttctcaacgtctacctcgccttccaa
caaagccaccggtcatcacagtggtgctacgacaactttgtcagctaccgctcgctgatg
gcggcggacagcgtgcgcctgcagctggaccgcatcatggagcaatcgggcttgccccgg
cggacctgcgacggggacgacgtccacatccgccgcatgctgctcactggtttcttcatg
caggttgctcaccttgagcgcagcggccactatttgacggtgaaagacaagcaggtggtc
cagctgcacccgtccagcgtgctaggccgcaagcccgagtggctcctctacggcgagtac
gtgctcacggccaagaactacattcgcatgtgcacccgcatccacccgcagtggttgctg
gaaatcgccccgcgctactatgagatgagcaacttcccgccgtgcgaagccaagagagag
ttgcagcgcatcaatggcgagctctcatccaagcaattgtga
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integrated database retrieval system
