Hippocampus comes (tiger tail seahorse): 109507076
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Entry
109507076 CDS
T04969
Symbol
pabpc1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03015
mRNA surveillance pathway
hcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109507076 (pabpc1)
09123 Folding, sorting and degradation
03018 RNA degradation
109507076 (pabpc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109507076 (pabpc1)
03041 Spliceosome [BR:
hcq03041
]
109507076 (pabpc1)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
109507076 (pabpc1)
mRNA cycle factors
Stress granule specific factors
109507076 (pabpc1)
Spliceosome [BR:
hcq03041
]
Complex C
Other components
Complex C specific factors
109507076 (pabpc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RRM_3
PABC_AtC3H46
Motif
Other DBs
NCBI-GeneID:
109507076
NCBI-ProteinID:
XP_019711789
UniProt:
A0A3Q2Y062
LinkDB
All DBs
Position
Unknown
AA seq
635 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFGKYGPALSIRVMTDESGKSKGFGFVSFER
HEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVNLYVKN
LDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQAGPPSGYFMAAIPQAQNRA
AYYSANQLAQLRPSPRWATQAVRPQHFQNMPNAMRPSAPRPQTFSTIRPAATTNTQVPRM
MASQRMPTQALSQRPASASATAAPVRAMPHYKYAAGVRNPQQHMASQPQVTMQQPAVHVQ
GQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESP
ESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaacccgagcgctcctagctatcccatggcctccctctatgtgggggacctgcatcca
gacgtaaccgaggccatgctgtacgagaaatttagcccggctgggcctatcttgtctatc
agagtgtgcagggacatgatcacccgtcgatcactcggttacgcctatgtgaactttcaa
cagcccgctgacgccgagagagccctggacaccatgaattttgacgtgatcaaaggcagg
ccacttcgcatcatgtggtctcaacgagatccctcgctgaggaagagcggagtgggcaac
attttcatcaagaacctggacaagtccatagataacaaggccctctatgataccttttca
gcattcggaaatatcctgtcctgtaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccacgaggctgctgagcgggccattgagaaaatgaatggc
atgttgctcaatgacagaaaagtatttgttgggcgcttcaagtcacgcaaagagagggaa
gcagagcttggggcccgtgcaagagaattcaccaatgtttatataaaaaattttggggaa
gatatggatgacgaaaagctcaaggagttgtttggaaaatatggaccagcactcagtatc
cgtgttatgacagatgaaagtggaaagtccaagggatttggcttcgttagctttgagaga
catgaagatgcacaaaaggctgtggatgatatgaacgggaaagaactgaatggcagacaa
gtttatgttgggcgtgcacagaaaaagggtgagcgccagaatgagctcaagcgcaaattt
gagcagatgaaacaggaccgcatgaccagataccagggtgtcaacctgtatgtgaaaaac
ttggatgatggccttgatgatgagcggctacgcaaggaattctctccatttggaacaata
acaagtgctaaagttatgatggagggtggccgcagcaaaggctttggctttgtgtgcttt
tcttctccagaagaggccaccaaagctgtgacagagatgaatggacgtatagttgccact
aagccgttgtatgttgccctggctcaacgcaaagaagagcgtcaggcccatctaaccaac
cagtacatgcagaggatggccactgtccgggccgtgcccaaccctgttctcaacccgtac
caagcaggtccaccctctggctactttatggcagccatccctcaggcccaaaaccgtgca
gcatattactctgccaaccagctggcccagctgcgtcccagccctcgatgggccactcag
gcagtgcgtccacagcacttccagaacatgcccaatgcgatgcggccttcagctcccagg
ccccagactttcagcaccatccgtcccgctgccaccaccaacacccaggtcccacgcatg
atggcctctcagcgaatgcccacccaggccctcagccagcgccctgccagtgcttcagcc
actgctgccccagtgcgtgcaatgccacactacaaatatgccgccggtgtccgcaatcct
cagcaacatatggcctcccagccacaagtcaccatgcagcagcctgctgtccatgtccaa
ggacaggagcctctgactgcctccatgctggctgctgccccccctcaggaacagaagcag
atgctgggtgagcgactgttccccctgattcagaacatgcatcccagtctggctggcaag
atcactggcatgctgctggagattgacaattctgagcttcttcacatgcttgaatcgcct
gaatccttgcgctcaaaggtggatgaagccgttgccgtactccaggcccaccaggccaaa
gaggctgctcaaaagtccaccactcctgctggtgttcccagtgtctaa
DBGET
integrated database retrieval system
