Hippocampus comes (tiger tail seahorse): 109508408
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Entry
109508408 CDS
T04969
Symbol
smarca4
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
109508408 (smarca4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcq03021
]
109508408 (smarca4)
03036 Chromosome and associated proteins [BR:
hcq03036
]
109508408 (smarca4)
Transcription machinery [BR:
hcq03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
109508408 (smarca4)
Chromosome and associated proteins [BR:
hcq03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
109508408 (smarca4)
Chromatin remodeling factors
BAF complex
109508408 (smarca4)
PBAF complex
109508408 (smarca4)
GBAF(ncBAF) complex
109508408 (smarca4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
109508408
NCBI-ProteinID:
XP_019713918
LinkDB
All DBs
Position
Unknown
AA seq
1647 aa
AA seq
DB search
MATPDPPMGGTPRPGPSPGPGLSPGGMMGPSPGPSPGSAHSMMGPSPGPPGSGHPHPPQG
PSGYPQENMHQMHKPMDAMHEKGLPDDPRYGQMKGMGMRPAGHSGMGPPPSPMDQHSQGY
PSPLGGSEHAPSPVPANGPPSGSMMPGGPSGPGPGPMEGTGDPNQGMGQPNRGGPPGPGG
PGGAVGGPTGTAGPTPFNQNQLHQLRAQIMAYKMLARSQPLPDHLQMAVQGKRPMPGMQQ
QPMPNMATSAAPVGGPGPGPAQANYNRPHGMVGPNMPPPGPAGVPPGLQGQPANGPPKSW
PEGPMVNAAAPSNPPQKLIPPQPTGRPSPAPPSVPPAASPVMPPQTQSPGQPAQPPPMML
HQKQNRITPIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELK
ALRLLNFQRQLRQEVVVCMRRDTALETALNAKAYKRSKRQSLREARITEKLEKQQKIEQE
RKRRQKHQEYLNSILQHAKDFKEYHRSITAKIQKATKAIATYHANTEREQKKENERIEKE
RMRRLMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKEKKKKKK
KKKPEPAEGGAAALGPDGEPLDETSQMSDLPVKVIHVDSGKILTGVDAPKAGQLETWLEM
NPGYEVAPRSDSEDSGSEEEEEDEDEDEKPHASAAQNEEKKKIPDPDSEDVSEVDVRHII
EHAKQDVDDEYGSASFNRGLQSYYAVAHAVTEKVDRQSSLLVNGQLKQYQIKGLEWLVSL
YNNNLNGILADEMGLGKTIQTIALITYLMEYKRINGPFLIIVPLSTLSNWVYEFDKWAPS
VVKVSYKGSPIARRAFVPILRSGKFNVLLTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKN
HHCKLTQVLNTHYLAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFA
MTGEKVDLNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLY
RHMQAKGVLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGYSGG
IVSGPDLYRSSGKFELLDRILPKLRATDHKVLLFCQMTSLMTIMEDYFAYRNFKYLRLDG
TTKAEDRGMLLKTFNDPASEYFVFLLSTRAGGLGLNLQSADTVVIFDSDWNPHQDLQAQD
RAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSGCERRAFLQ
AILEHEEQDEVGARGGCRTRGAWEEDEVPDDETVNQMIARSEEEFDQFMRMDLDRRREDA
RNPKRKPRLMEEDDLPGWILKDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQW
LKAIEEGNLEDIEEEVRHKKTTRKRKRDRDHDGGPTTPSSSSGRGRDKDDEVKKAKKRGR
PPAEKLSPNPPSLTKKMKKIVDAVIKYKDGSNGRQLSEVFIQLPSRKELPEYYELIRKPV
DFRKIKERIRSHKYRSLNDLERDVMLLCQNAQTFNLEGSLIFEDSIVLQSVFTSVRQKIE
KEEDSEGEESEEEEEDLDEGSESESVCSVPARSVKVKIKLSRKEKGDRGGKGQRRRGRGV
RAKPVVSDDDSEDEQEEEHSASGSEED
NT seq
4944 nt
NT seq
+upstream
nt +downstream
nt
atggccactcctgaccccccaatgggagggacacctcggcccggtccctccccaggccca
gggctatctccaggtggtatgatgggccccagtccaggcccctcccctggctctgctcat
agtatgatggggcccagtccaggacctcctggatctggacacccgcaccctccacaggga
ccctcaggatatcctcaggaaaacatgcaccagatgcacaaaccaatggatgccatgcac
gagaagggcttgcccgacgaccctcgctacggtcaaatgaagggcatgggcatgagacca
gcagggcacagtgggatggggcctcctccgagccccatggaccaacattcccaaggttat
ccctctccattgggtggctcagagcatgcaccaagcccggttccagctaatggtcctccg
tctggctccatgatgcctggtgggccatctggtccagggcctggcccaatggagggtaca
ggggacccgaatcagggaatgggacagccaaaccgtgggggtcctccaggtccaggtgga
ccaggtggtgctgtaggtggaccaacgggtactgcaggacccacgcctttcaaccagaac
cagttacaccaactcagggctcagattatggcctacaagatgctggcacgcagtcagccc
ttgccggaccacttgcagatggccgtgcaagggaagaggcccatgccagggatgcagcaa
cagcccatgcccaacatggccacttctgctgcccctgtaggcgggccagggccaggacca
gctcaggccaactacaacagacctcatggtatggttggtcccaatatgccaccccctgga
cctgcaggagttcccccaggcctacaaggccagcctgccaatggacctcctaagtcatgg
cccgaaggaccaatggtgaatgctgccgctccgtccaatcctcctcagaagttgattcct
cctcagcccacgggcagaccgtctcctgctcctccctctgtgccacccgctgcctcacca
gtaatgccccctcagacgcagtctccaggtcagcctgcacagccccctcccatgatgctt
caccagaaacagaatcgcataacccccatccaaaaacccagagggctggacccagtggaa
atcctccaggagagggagtacaggctgcaagcccgtattgctcaccgtattcaggaactg
gagaacctaccgggttcccttgctggtgacctacgtaccaaagcgaccattgagctcaaa
gccctgaggctgcttaactttcagagacagctacgccaagaggtggtggtctgcatgcgt
cgcgacaccgctctcgaaactgctcttaatgccaaggcctacaagcgcagcaagcgccag
tctttacgtgaggcccgtatcacagagaagcttgaaaaacaacagaagattgaacaagaa
cggaaacgtcgacaaaaacaccaggaatacctcaacagcatcctgcagcacgctaaggac
tttaaggagtaccatcgatccatcacagcaaagatccaaaaggccaccaaagcgatcgcc
acctatcacgcaaacactgagcgtgagcaaaagaaagagaatgagcgcattgaaaaggag
agaatgcggaggctgatggccgaagatgaggagggatatcgtaaacttattgaccagaag
aaagataagcgtctggcctacctattgcagcagacggatgaatatgtggccaacctcacg
gagctggtgcgagctcacaaagctgtacaagctctcaaagaaaagaaaaagaagaagaaa
aagaagaagccagagcctgcagagggcggcgccgctgctcttggacccgatggagagcca
ttggatgagaccagtcaaatgagtgacctcccagtcaaggtcatccatgtggacagcggg
aaaatcctgactggtgttgatgcgcctaaggcgggtcagctggaaacctggcttgaaatg
aaccctgggtatgaagtagcaccgcgttcagacagcgaagacagtggctctgaagaggag
gaggaagatgaggacgaggatgagaaacctcatgcttctgcagctcagaatgaggagaaa
aagaagatcccagacccagatagcgaagacgtgtctgaagtggatgttcggcacatcatc
gagcatgccaagcaggacgtggatgatgagtacggaagtgcatcgttcaaccgtgggctg
cagtcctactacgctgtggctcatgcagtcactgagaaagtggacaggcagtcatcactg
ttggtcaatggtcagctcaaacaataccagatcaaagggctagagtggcttgtgtcactt
tacaacaacaacttaaatggcatcctggctgatgagatgggtctgggaaaaactatccag
accattgccctgattacctacctcatggaatacaagcgcattaacgggcctttcctcatc
atcgtgccactctcaacactgtcgaactgggtgtatgagtttgataagtgggcgccatct
gttgtgaaagtttcctacaagggctcaccaattgctcgccgcgcattcgttcccatcctg
cgcagcggcaaattcaatgtgctgctcaccacatacgagtacatcatcaaagataagcag
gtgctagcaaagcttcgttggaagtatatgattgtggacgagggccatcgtatgaagaac
caccactgtaagctgacccaggtgttgaacacgcactacctggccccgcggcgcttgctg
ctcacaggcactcctctgcagaacaagctccctgagctctgggccctgcttaacttcctc
ctgcccaccattttcaagagctgcagcactttcgaacaatggttcaacgccccgttcgct
atgactggagagaaagttgacctcaatgaagaagagaccattctcattattcggcgtcta
cacaaggtgctgcggcccttcttactacgccggctcaaaaaggaggttgaggcccagctg
ccagagaaggtggagtatgtgatcaaatgtgacatgtcagcccttcagagagtgttgtat
cgacacatgcaggcgaagggggtcttgctcactgatggatcagagaaagataagaagggt
aaaggtggcacaaagactctgatgaacacgattatgcagctgagaaaaatttgcaatcac
ccctacatgttccaacacattgaggagtctttctctgagcacctgggttattctggcgga
atcgtgagtggtcctgacttgtaccgctcctctgggaaatttgagctgttggatcgtatc
ctgcccaaactgagggccaccgaccacaaagtgctgctcttctgtcaaatgacctcactg
atgaccatcatggaagactactttgcctaccgcaacttcaagtacctgcgtcttgatggt
accacaaaggcggaggatcgtgggatgctgttgaaaactttcaatgacccagcttctgag
tactttgtgtttctgctcagcacccgagcaggaggcttgggtctcaacctgcagtccgct
gacaccgttgtgatctttgacagtgactggaacccccatcaggacctgcaagctcaggac
agggcccatcgtattggtcagcagaatgaggtgcgcgtccttcggctctgcactgtcaac
agcgtggaggagaagattctggcagcagccaagtacaaactgaatgttgaccagaaggtc
atccaggcgggcatgtttgaccagaagtcttcgggctgtgagcgtcgggccttcttacag
gccattctggagcacgaggaacaggacgaggtcggggctcgtggaggctgccgcactagg
ggggcgtgggaggaagatgaagtgcctgatgatgagacagtcaaccagatgattgccaga
agtgaagaagagtttgaccagttcatgcgcatggatctcgacagacgccgcgaggacgcc
cgcaaccccaagagaaaacctcgtctgatggaggaggacgatctccccggctggattttg
aaagatgacgctgaggtcgagaggcttacctgtgaagaagaagaggagaaaatgtttggc
cgaggctcccgccagcgtaaggaggtggactatagcgactcgctcaccgagaaacagtgg
ttgaaggccatagaagagggtaatttggaagacatcgaggaggaagtgcgccataaaaag
acaaccagaaagcgtaagagagaccgcgaccatgacggcgggcccaccacaccgagctcc
agcagcggccgggggcgtgacaaggacgacgaggtgaagaaagcaaagaaacgtgggcgg
ccgcccgcggagaaactctctcctaaccctccatcactcaccaagaagatgaagaagata
gttgatgccgtcatcaaatacaaggacggtagtaatggacgacaactgagtgaggtcttc
atccagctgccttcccgcaaggagcttcctgagtactatgagctcatccgcaaaccagta
gattttcggaagatcaaggagaggatccgcagccataagtaccgcagcttgaatgacctc
gagagggatgtgatgctgctgtgtcagaacgctcagacttttaacctcgagggatctctg
atcttcgaagactcgattgtgcttcaatcagtattcaccagcgtgagacagaagattgag
aaggaggaagacagtgaaggagaggagagcgaagaagaagaggaagaccttgacgagggt
tctgagtctgaatctgtgtgttccgtcccagcccgttctgtgaaggtcaagattaaactg
agccggaaagaaaagggggaccgtggtgggaaaggacaacgacggaggggccgtggcgtg
cgagctaaacccgtggtgagcgacgacgacagtgaggacgaacaggaagaggagcattcg
gccagcggcagcgaagaggactga
DBGET
integrated database retrieval system
