Hippocampus comes (tiger tail seahorse): 109512175
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Entry
109512175 CDS
T04969
Symbol
col6a6
Name
(RefSeq) collagen alpha-6(VI) chain isoform X1
KO
K06238
collagen type VI alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04510
Focal adhesion
hcq04512
ECM-receptor interaction
hcq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
109512175 (col6a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
109512175 (col6a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
109512175 (col6a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hcq04147
]
109512175 (col6a6)
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109512175 (col6a6)
Exosome [BR:
hcq04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
109512175 (col6a6)
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109512175 (col6a6)
Hyaluronan
Extracellular matrix or blood plasma proteins
109512175 (col6a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VWA
VWA_2
Collagen
Kunitz_BPTI
VWA_CoxE
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
109512175
NCBI-ProteinID:
XP_019719265
LinkDB
All DBs
Position
Unknown
AA seq
2694 aa
AA seq
DB search
MAGERCLLLVLMGAMCFHGNAAQRTVCTQEAVADLVFMVDGSWSIGAENFERIRQFLSTL
VNSFDVGPDRVRMALVQYSTTPRTEFLLNTFQKKAEILQYVSTLPYMGGGTHTGQGLDFM
LSKHFVEEAGSRANQNVAQIAVVITDGKSQDDVESHAAELKRKGIVLYAIGIKDADEDQL
REIASEPHSQHVYSVSDFAALQGISQSIAQTLCTTVEEVKRQLLQVSQECAKATVADVVF
LVDGSSSIGISNFQEVRGFLRSVVSGFDVGPDKVRVGLAQYANEPFQEFLLKDHMDKKSL
LAALDKFPYRAGGTETGKAIDFIRTQFFTEGAGSRMNQRVPQIAVVITDGDSADDVVEAS
RRLRQHGVIVYAIGVGQANMVELEAIANRPSDNFRFFIDSFQALQKLSDGLLQTVCTSME
NQRQALSERFADIFILVDGGLSQAEFQQVRSLLIRLTNQLTFGLSAHRLGVAEYGQDTKV
EFRLNTHQTNEETSAAIRRFRLRKLQPNEPRNLGAALEYARSNFFTSQAGSRADQGVRQF
LVVLSGKDSDDDVDKQSRLLKAQGVKVVGLSLGASIPQMRVVASSPSIVYQSTVNVLPSL
KATFEDQELPANLTGECKGAKLADIVFIIDESGSIGTPNFQLVRTFLHSVVSGLDVAPTK
VRVGIVMYSDKAKAQVYLNTFDDKSELLSFIKIMPYHGGGTNTGVALNFTREHVFTKERG
SRKDKGIQQVAVVITDGKSQDDVSNAAVALRRAGVKIYTVGVKNANHAQLVKMASHPPSK
HIFTVDSFSKLQALEQKLQNIVCHNILRQAVSVNMRRSSIKEGCLQTDEADIFFLIDHSG
SIYPTDFYDMKKFIIEFISTFRIGPQHVRLGVAKYADAPNLEFDLTAYTDAKSLEKAVEG
IVQVGGGTETGRALEFMGPQFDRAVATRGQKVPEYLVVITDGKSTDQVKGPAEKLRAQGV
IIYAIGVKNADMAELREISGDSKKTFFVNNFDALNPIKDDIITDICTTDVCKDVPGDLLF
LVDSSGSIYPQDYEKMKDFMKSVVGKSNIGQSDVHVGVMQFSTIQQLVFPLNRHFTKDQM
LQAIDGMQQIGGGTNTGEAIAALSPYFDASQGGRPGVRQRMVVVTDGESQDNVKIPAAAL
RRKGVVAYAIGVMDANTTQLLEITGSPERVFAERDFDALKDLESQVAMEICDPDRECKKT
EKADIIFLVDGSTSITLDKFQSMQKFMSSMVSQTTVGKDLTRFGVILFSSEPKSVFTLNQ
YESKRDVLKAISALKSPYGDTYTGKALEYALPFFNTDNGGRAALNVPQILMVITDGDATD
QNNLRQPSVALRDKGITVFSIGVEGAIRDQLEIMANHDSSRVFYVDNFAALETLHKNITF
VLCNSTKPACEKQKADLIFLLDQSGSISQRDYTIMKNFTTQLVGSFKVSQDLVRVGLAQF
SDIFQHEFYLNQFFTHESVIKRIMALNQRGGGTLIGLALDAIRSHFEESNGCRRSAGVSQ
NLVLITDGESQDEVQDAADHLRTLGVEVFAIGVGGAHDLQLLQITGRHDRLFTVENFDSL
DKIRLKLVDTICKSKPIEEQTSCSVDIAMGFDISQRSGLAGEMLVSGHNKLRTFLPEIVH
YASTIQGLCCIGPDPIKTKIGYRVVGQDGRSLYDFKFKPYDPNDDVVTKVMTLNLNVPTR
LNSAMLRSFGQKFKEDSRGGVKVLVIFSDGLDEDVVTLEYESELLQKSGVDALLMVGLQG
APDLAQLQMLEFGRGFGYKVPLSIGMQSVGSTVLKQLDTVSNRECCNVMCKCSGHEGIRG
SRGSLGSKGRSGLVGYPGFPGEEGVPGERGSPGPSGPQGVQGCAGVRGSKGYRGLRGNRG
EDGEVGLDGVNGDQGVSGQDGSRGERGHPGNPGIPGIRGEAGLKGQRGLRGDPGEPGRDN
TVRGPKGDVGNPGLPGEPGQDGRAGDAGGPGNAGPDGRRGPLGEKGAAGAPGDPGVSGST
GASGPQGPRGVRGQPGPRGIPGLPGPQGGPGSAGGAGSTGRRGGHGQKGQPGDPGVRGVQ
GTLGPRGTPGQDGRDGYGPAGPKGIKGDPGFPGYPGLVGESGLQGPKGLPGRKGNQGRGG
NSGRTGQAGQPGEPGYEGHKGPRGPAGGKGKTECELITFIRDNCACSMDLGSCPALPTEL
VVALDMSEDVTPAAFERQRAALLSLLEDITVAESNCPTGARVAVVAYSAHTKYLVRFHDY
RRKTQLLDAVRNVALERTSNRRQLGAAMRFVAHNVLKRVRSGAMMRKVAVFFSNGPSQDI
SDVVTAIMEYRALNVVPAVISTRNAPAISRAMELDDTGNSIFTVLGRDATADLRKVKNCA
ICYDPCRRSQECAFVLESPPPQQVDADVVMLVDGSREIQADEYAGAQQLLGSVVEQLAIS
PQPGRADARARVAVVQQSGARDTKLEFGLRAYQEGRLMRSHLLSNMRQEGGSSALGHALN
LGLREAMTDGSPRRRKVVLAVVGTRTAPEDRQVLRAAALKAKCQGVALFVVTVGERYDRE
QVEDLASEPRQQHLLHLGRLQQEEQDYVRRFFRVFMAALDKGFTTYPPPSFKRICQQMDQ
DGGQIFLNGQGQAQVFADQPRGGPGGHLQEQTGQTDVVHMLSPEEDDTPMPRSTDASSTD
PCLLGEDAGDCRDYAMMWFYDSEQRQCKRFWYGGCGGNANRFSTMEACQDACVA
NT seq
8085 nt
NT seq
+upstream
nt +downstream
nt
atggcgggggagcggtgtcttctccttgttctcatgggggccatgtgtttccatggcaac
gctgcacagaggacagtatgcactcaagaagccgtggctgacctggtcttcatggtggac
gggtcatggagcatcggcgcggagaattttgagcgcatccgccagtttttgtccacgctg
gtcaacagcttcgacgtgggtccagaccgggtccgcatggctctggtccagtacagcacg
acaccaagaaccgagttcctgctcaacaccttccagaagaaggccgaaatcctccagtat
gtcagcacgctgccctacatggggggcggtacccacacgggtcaaggcctggattttatg
ctgagtaagcattttgtggaagaggccgggagcagggcgaaccagaacgtggcccagatc
gccgtggtcatcacggacggaaaatctcaagatgacgtggagtctcacgccgcggagctg
aagaggaaaggaattgtcttgtacgccatcgggattaaagacgcggatgaagatcagctg
agggagatcgccagtgaaccgcatagtcagcacgtctacagcgtgtccgactttgccgcg
ctgcagggaatttctcagagcatcgcccaaaccttgtgcacgaccgtggaggaggtcaaa
cgacaacttctgcaagtgtctcaagaatgtgccaaagccaccgtagccgatgtggtcttc
ctggtggatggctcttccagcatcggcatttccaatttccaggaggtcagaggctttctc
cgaagcgtggtgtccggtttcgacgtcggtcctgacaaggtccgcgtgggtttggcgcaa
tacgccaatgaaccttttcaagagttcttgttgaaagatcacatggacaagaagtctctg
ctggccgcactggacaagttcccctaccgagcgggaggcacggagacgggcaaggccatc
gacttcatacggacgcagttcttcacggaaggcgccggaagccgaatgaaccagagggtg
cctcagatcgctgtggtcatcacggacggagactccgccgatgacgtagtggaggcgtca
cggcgcctcagacaacacggggtcatcgtctacgctatcggagtgggacaagccaacatg
gtcgagttggaggccatcgccaaccgaccgtcggacaacttccgtttcttcatcgacagt
ttccaagctcttcagaaactgagcgacggtctgctgcaaaccgtgtgtacgtccatggag
aaccagaggcaagctttatccgaaaggtttgcagacatcttcatcctggtggatggcggc
ttgagtcaagccgagttccagcaggtccgaagcctcctgatccgactgaccaaccaactg
accttcgggctctcagcacaccgcctcggcgtggctgagtacggtcaagacaccaaggtg
gaatttcgtctgaatactcaccagaccaacgaagagaccagcgccgccatccgccgcttc
cggctgcgtaaactacagcccaacgagccacgcaacttaggtgcagccttggagtatgcc
cgctcaaactttttcaccagccaggcgggaagccgggcagaccagggtgtccgacagttc
ctggttgttctaagtgggaaagattccgacgatgacgtcgacaagcagtcccgcttactc
aaagcccaaggcgtcaaagtggtgggtctaagtctcggtgcatccataccacagatgcgg
gtggtagcctccagtccttccatcgtctaccagtccaccgtcaacgtccttccttctctg
aaagctacttttgaagaccaggaactgccggccaatcttactggagaatgtaaaggagcc
aaactggcagacatcgtgttcatcatcgatgagtccggaagcatcggaaccccaaacttc
cagctggtacgcacgttcctgcactcggttgttagcgggctggacgtggctccaaccaag
gtgcgagtgggcattgtgatgtacagtgacaaagcaaaagcgcaagtctacctcaacacc
tttgacgacaagagcgagttacttagtttcatcaaaataatgccataccacggcggcggc
actaatacgggagtcgccctcaatttcacgcgggagcacgtgttcaccaaagaacgaggc
agccggaaggacaagggcatccagcaggtggcggtggtgatcaccgacgggaaatcccaa
gacgatgtgagcaacgctgccgtggccctccgtcgggcgggcgtcaagatctacacggtg
ggcgtcaagaacgccaaccacgcccagctggtgaagatggcgtcccacccgccgagcaag
cacattttcaccgtggacagtttctccaaactccaagcgctggagcagaagctgcagaac
atcgtttgccataacattctgcggcaagcggtcagcgtcaatatgagaagaagtagcatc
aaggaaggctgcttgcaaactgatgaagcggacatcttcttcctgatagatcactctggc
agtatctaccccaccgacttttatgacatgaaaaagttcatcatcgagtttattagtacc
ttccgcatcgggcctcagcacgttcgcttgggcgtcgccaagtacgcagatgcgccaaac
ttggaatttgatctgacagcctacacggacgccaaaagcctggagaaggcggtggaggga
atcgtgcaggtggggggcgggacggaaacaggaagggcgctggagttcatgggcccgcag
tttgatcgcgccgtggccactcgtggtcagaaggtgccggaatacctcgtggtcatcact
gacgggaaatccacagatcaggtcaaagggcccgctgagaagctacgagctcagggtgtc
atcatctacgccatcggagtgaagaacgctgacatggctgagcttcgggagatatccggt
gactccaagaagacgttctttgtcaataattttgatgctctgaaccccatcaaggatgac
atcatcactgacatctgcaccacagatgtttgtaaagatgtacccggagacctcctgttc
ttggttgacagctccgggagcatttatccacaggactacgaaaaaatgaaggacttcatg
aaatcggtcgtcggcaagtccaatatcgggcagagcgacgtccacgtgggcgtcatgcaa
ttcagcaccatccagcagctggtgttccccctcaaccgccatttcaccaaagaccaaatg
ctgcaagccatcgacggcatgcaacagattggaggagggacgaacacgggagaagctatc
gcggctttatcgccgtactttgacgcgtcccaaggcgggcgccccggtgtgaggcaaagg
atggtggtggtaaccgatggagaatctcaagataatgtcaaaattcccgctgcggccctg
aggcgcaagggtgtggtggcctacgccatcggggtgatggatgccaacaccacccagctg
ctggagatcaccggatcaccggaacgagtctttgctgagagggactttgatgccctgaag
gacttggagagccaagtggctatggagatctgtgatccagatcgagaatgcaagaagacc
gagaaggcggacatcatcttcctggtggacggctctacgagcatcaccttggacaagttc
caaagcatgcagaagttcatgtcatccatggtcagccaaacgacggtcggaaaagacctc
acccgctttggagtcattctgttctcatccgaacccaaatcagtttttactctcaaccaa
tatgagtccaagcgagatgttctaaaagcaatatcagctctcaaatctccgtatggggac
acctacacaggaaaggccttggaatacgccttgcccttcttcaacaccgacaacggcggt
cgggcagcgctcaacgtgcctcagattctgatggtcatcacagacggcgacgccaccgat
cagaacaatctgcgtcaaccttccgtcgcgctgcgagacaaaggcatcaccgtcttcagt
atcggagtggaaggcgccatcagggaccagttggagatcatggcgaatcatgactcaagc
cgagttttctacgtggacaattttgccgcgctggaaactttgcacaagaacatcaccttt
gttctctgcaactccacaaaaccagcctgcgagaagcagaaagccgatctgatcttcttg
ctcgatcagtcgggcagcatcagccagcgggactacaccatcatgaagaactttaccacg
cagctggtgggcagcttcaaagtcagccaggatttagtacgcgtcggactggcccaattc
agtgacattttccaacacgagttctacctgaaccaattcttcactcacgagtcggtgatc
aagcgcatcatggccctgaaccagcgcggcggcggcaccctgatcgggctcgccctggat
gccatcaggagtcactttgaggaatccaacggttgccgcaggtcggccggcgtctctcaa
aacctggtgctgattacagacggcgaatcccaggatgaagtgcaggacgccgccgaccac
ctcaggactctcggggtggaggtgtttgccattggcgtgggtggcgcgcacgacctgcag
ctcctgcagatcacaggcagacacgacagactctttaccgtcgagaactttgacagtttg
gacaagatcaggctaaagttggtcgacaccatctgtaaatccaagcctatcgaagagcag
acaagctgcagtgtggacatcgccatgggcttcgacatttctcaaagaagcggactcgcc
ggcgagatgttggtcagcggccataacaagctcaggactttcttgcccgagattgtccat
tacgcctccaccatccaggggctgtgctgcattgggcccgacccgatcaagaccaaaatc
ggttacagggtggtgggccaggacggacgatctctttacgacttcaagttcaaaccctat
gaccccaatgatgacgtggtgaccaaggtcatgactttgaatttgaacgttcccactcgg
ctcaacagcgccatgctcaggtccttcgggcagaaatttaaggaggactcccgtgggggc
gtgaaggttctggtcatcttctcagacggactcgatgaagacgtagtgacgttggagtac
gaatcagaactgctgcaaaagtctggtgtggacgcgctgctgatggtgggcctgcagggg
gcgccggacctggcacagcttcagatgttggagttcggccgagggttcggttacaaagtc
ccgctcagtatcggcatgcagagcgtgggcagcacagtactcaagcagcttgacactgtg
tccaaccgcgagtgctgcaacgtcatgtgcaaatgttcaggacacgaaggcatccgcgga
tctcggggttccctggggtcaaagggtcgctcagggctagtgggttaccccggcttccca
ggagaggagggcgttcccggtgagcgtggcagtcctggacccagtggacctcagggtgtt
cagggctgtgctggagtccgaggatcaaaggggtaccgaggcctgcgaggtaatcggggg
gaggacggagaagtcggactggacggcgtcaacggagaccagggcgtgtcaggacaagat
ggtagtcgaggagagcgaggacatcccggaaatccgggtattcccggtatccgaggggag
gcggggctcaagggacagcgaggcttgagaggagatccgggagaaccaggacgggacaac
accgtgcggggacccaagggagacgtcggaaatcccggattacctggagaaccaggacaa
gacgggagggccggagatgctggaggtcctgggaatgccggtcccgacggaagacgagga
ccccttggagaaaagggtgctgcaggagctcctggtgatcctggtgtgtcaggaagtact
ggtgcttcaggtcctcagggtcccagaggggtcagaggtcaacctggaccaagagggatc
cctggacttcctgggccacagggaggaccgggctcagcgggaggggcgggctccacggga
agacgcggtggtcacggtcagaagggacaacctggagatccaggcgtgcgaggagtgcaa
gggacgctgggaccacgtggcacgccgggtcaggatggcagagatggatatggaccagct
ggacccaaagggatcaagggagatccaggcttccccggttatcccggtttagtgggtgag
agcggcctgcagggtcctaaaggtctcccggggcgcaaaggcaaccaaggtcgcgggggc
aactcaggtcgcactggacaggcgggtcaacctggagagcccggctacgagggacacaag
ggcccacgaggtcccgccgggggtaaagggaagacggaatgcgaactgatcacgttcatc
cgagacaactgtgcttgctccatggacttgggctcttgcccggctctcccgacggagctg
gtggtggcgctggacatgtccgaggatgttacgccagcggcgttcgagcgccagcgtgcg
gccctgctgtccctcctggaggacatcaccgtggcggagagcaactgccccacgggggcc
cgcgtggccgtggtggcctacagtgctcacaccaaatacttggtccgcttccacgactac
cggcgcaagacgcagctgctggatgccgtgaggaacgtggccctggagcgcacatccaac
cggcggcagctgggcgccgccatgcgtttcgtggcgcacaacgtgctcaagcgcgtgcgg
tcgggcgccatgatgagaaaggtggccgtgttcttctccaacgggccgtcgcaagacatc
agcgacgtggtgacggccatcatggagtaccgcgccctcaacgtggtgccggccgtcatc
tccacgaggaatgcgcccgccatcagccgcgccatggagctggacgacacgggaaactcc
atcttcaccgtgctggggagggacgccactgctgacctgaggaaggtgaagaactgcgcc
atctgttacgacccgtgccggcgttcgcaggagtgcgcgtttgtcctggagtcgccgccg
ccgcagcaagtggacgcggatgtggtgatgctggtggacggctcgcgcgaaatccaggcc
gacgagtacgccggcgcgcagcagctcttgggctccgtggtggagcaactagccatcagc
ccccagcccggccgggccgacgcccgcgcccgcgtggccgtggtacagcagagcggcgcc
cgtgacaccaagctggagttcggcctgcgggcttaccaggaagggcggctcatgaggtcg
cacctgctgagcaacatgcgccaagagggaggatcctcggctctggggcacgccctgaac
ctcggcctgagggaggcgatgacggatggcagcccccgcaggaggaaggtggtgctggcg
gtggtgggcaccaggacggcgcccgaggaccgccaagtgcttcgcgccgccgctctgaag
gccaaatgtcagggggtggcgctgttcgttgtgacggtgggcgagcgctacgaccgcgag
caagtggaggacttggccagcgagcccaggcagcagcacctgctgcacttgggacgactt
cagcaggaagaacaggactacgtgcggaggttcttcagggtcttcatggccgcgttagac
aagggcttcaccacatacccaccgccgtctttcaagcggatctgccagcagatggatcaa
gatggcggacagatcttccttaatggtcaagggcaggcgcaggtgtttgccgaccagccg
cggggagggccaggcggccatttgcaggagcaaaccggacagacggacgtcgttcatatg
ttgagcccagaagaagatgacacgccaatgccgcggtcgactgatgccagctccacagac
ccctgcctgctgggcgaggacgcgggcgactgccgggactacgccatgatgtggttctac
gacagcgagcagcggcagtgcaagcgcttctggtatggcggatgcggcggaaacgccaac
cgcttcagcaccatggaggcctgccaggacgcctgtgtggcctga
DBGET
integrated database retrieval system
