Hippocampus comes (tiger tail seahorse): 109512321
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Entry
109512321 CDS
T04969
Symbol
scn8a
Name
(RefSeq) sodium channel protein type 8 subunit alpha isoform X1
KO
K04840
voltage-gated sodium channel type VIII alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
109512321 (scn8a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hcq04040
]
109512321 (scn8a)
Ion channels [BR:
hcq04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
109512321 (scn8a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
PKD_channel
IQ_SCN5A_C
FraC
HpsJ
GPHH
Lustrin_cystein
Motif
Other DBs
NCBI-GeneID:
109512321
NCBI-ProteinID:
XP_019719496
LinkDB
All DBs
Position
Unknown
AA seq
1965 aa
AA seq
DB search
MAAPLLAPPGPDSFKRFNVESLAALEQRINEEKNKKPAKQDSSYRDDDDENKPKPNSDLE
AGKSLPYIYGDIPKGMVAVPLEDLDPYYLNSQKTFIVLNRGKTIFRFSATPALYFISPFN
PVRQLAIKILIHSLFSMIIMCTILTNCIFMTFSDPPEWSKQVEYTFTGIYTFESLVKITA
RGFCIDGFTFLRDPWNWLDFMVISMAYITEFVDLGNVSALRTFRVLRALKTISVIPGLKT
IVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRHKCVIWPINITESFPINGSFD
WNEYIMNNTNFYILPGQSDALLCGNSSDSGRCPEGYTCMKAGRNPNYGYTSFDSFGWAFL
ALFRLMTQDFWENLYMLTLRAAGKTYMIFFVLVIFVGSFYLVNLILAVVAMAYEEQNQAT
MEEAQQKEEEFKAMLEQLKKQQEEAQTAAMATSAGTVSEDAVEDDGGGRLSCSSSEMSKL
SSKSAKERRNRKKKWRQKEQEKEKGDSEKFVKSESDDGSKRSRFRFPDNRLGRKSSIMNQ
SLLSIPGSPFLSRHNSKSSIFSFKGRGKDVGSENEFADDEHSTVEECEERRGSLFSPYRR
SSYSGYHGKRNSTVDCNGVVSLIGPGPGGRLLPEVKIDKAATDNSPTTEVEVKKKLSGSL
MVSVDQLNTSFGRKERANSVMSVITNTLVEELEESQRKCPPCWYKFSNTFLIWECSPTWL
RIKEIVNLIVMDPFVDLAITICIVLNTLFMAMEHYPMTPDFEDMLYVGNLVFTGIFAGEM
MFKLVAMDPYYYFQEAWNCFDGFIVTLSLVELALADVEGLSVLRSFRLLRVFKLAKSWPT
LNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKNYKDCVCKIDADCELPRWHMN
DFFHSFLIVFRVLCGEWIETMWDCMEVAGQGMCLIVFMMVMVIGNLVVLNLFLALLLSSF
SADNLAATDDDGELNNLQISVIRIKKGIAWIKAKVRLLVASLLRKPPMEDEQKPLDDMYD
KKLNCIANHTGVDINRDLDYAKNGNGTTSGIGSSVGKYMIDEDHMSFIHNPNLTVCVPIA
VGESDFENLNTEDFSSESDNENSKELDDTSSSEGSTIDIKPDVEEVVVVETVEEYMEPEA
CWTDACVAKYKCCDVDITMGWGKSWWFLRKTCYLIVEHNWFETLIIFMILLSSGALAFED
VYIEQRKTIRIILEYADRVFTYIFILEMLLKWVAYGFVKYFTNAWCWLDFFIVDVSIVSL
VANALGYSDLGPIKSLRTLRALRPLRALSRFEGMRVVVNALVGAIPSIMNVLLVCLIFWL
IFSIMGVNLFAGKYYFCFNETSEEYFPVDVVNNRSQCEALVEQNFTEVRWKNVKINFDNV
GAGYLALLQVATFKGWMDIMYAAVDSREVGDQPDYEVNIYMYIYFVVFIIFGSFFTLNLF
IGVIIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPQNKIQGMVFDFV
TQQVFDISIMILICLNMVTMMVETDDQSDETENVLYWVNFIFIVVFTTEFLLKLFALRHY
YFTNGWNIFDVVVVILSIVGMFLADLIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRT
LLFALMMSLPALFNIGLLLFLVMFIFSIFGMSNFGYVKHGAGIDDMYNFETFGNSMIILF
MITTSAGWDGLLLPILNYPPDCNPNLENPGTSVKGDCGNPSVGIFFFVMYIIISFLIVVN
MYIAIILENFSVATEESADPLSEDDFETFYEIWEKFDPTASQFITFAKLSDFADALEHPL
RVPKPNTIELIAMDMPMVSGDRIHCLDILFAFTKRVLGDSGELDMLRQQMEERFVAANPS
KVSYEPITTTLRRKQEDVSARIIQNAYRAHLIRRGIIFKRHTFANNKLENGGTNQEKKES
TPSTASLPSYDSVTKPDKEKQDDNKEDWARKEKDKNQKDEWESKC
NT seq
5898 nt
NT seq
+upstream
nt +downstream
nt
atggctgcccccctactcgcaccgccaggtcctgacagcttcaagagatttaatgtggaa
tcattggcggccctcgagcagcgcatcaacgaggagaagaacaagaagccagccaagcag
gacagcagttaccgtgatgacgatgatgagaacaagcccaagcccaacagtgacctggag
gctggcaagagcctgccctacatctatggggacatcccgaagggaatggtggcggtacca
ctggaggatctggacccgtactacctgaattctcagaaaacatttatagtgctaaatagg
gggaagacaatcttccgtttcagtgccacacctgccttgtacttcataagtccttttaat
ccggttaggcaactagctattaaaattttgatacattctcttttcagcatgatcatcatg
tgtacgattttgaccaactgtatattcatgacctttagtgatcctcccgagtggtcaaaa
caagtagagtacaccttcacaggaatttatacatttgagtcgctcgtaaaaatcacggca
cgaggattctgtatcgatggctttacattcctccgagacccatggaactggctggacttt
atggtcatctccatggcatatataacagagtttgtggacctgggcaatgtatctgcgctg
agaacgttcagagttctccgagcattgaaaactatctctgtcattccaggcctgaagacc
atcgtgggtgccctcatccagtcagtcaagaagctttccgatgtgatgatcctgactgtc
ttctgcctcagtgtctttgcactcatcggtctgcagctcttcatgggcaatctgcgccac
aagtgtgtcatctggcccatcaacataaccgagagcttcccgatcaatggcagcttcgac
tggaatgagtacatcatgaacaacacaaatttctacatcctgcccggccagtccgatgct
cttctctgtggaaacagctcagactcagggcgttgcccagagggatacacgtgcatgaaa
gctggacggaatccaaactacggttacaccagcttcgacagcttcggatgggccttcctg
gctctcttccgactcatgacacaggacttctgggaaaacctctacatgctgacattaaga
gcggcaggaaagacctacatgatcttctttgtgttggtgatctttgtgggttccttctat
ttggtcaacctgatcttggctgtggtggccatggcctatgaggagcagaaccaagctacc
atggaggaggcccagcagaaggaggaagagtttaaggccatgctggagcagctcaagaaa
caacaagaagaagctcaaaccgctgccatggcaacctctgctggaacagtatcagaggat
gcggtcgaggatgacggtggagggcggctgtcgtgcagctcttctgagatgtccaagctc
agctccaagagtgctaaagagcggcgcaaccgcaagaagaagtggcgacagaaagagcaa
gagaaggagaaaggcgatagcgagaagtttgtcaaatccgagtcggatgatggcagcaaa
aggagccgcttccgctttcccgataaccgcctggggcgaaaatcttctattatgaaccag
tctctcctcagcataccaggttcacccttcctgtcccgccacaacagcaagagcagcata
ttcagtttcaagggccgcggcaaggacgtgggttcggaaaacgagtttgccgatgacgaa
cacagcacggtggaggagtgcgaggagcgccgggggtccctgttcagcccgtatcggcgc
agcagttatagtggctaccatgggaagaggaacagcacagtggattgcaacggcgtggtg
tccctcatcggccctgggcccggtggacgccttctgcctgaggtgaaaatagataaggca
gctactgacaacagtcccactactgaggttgaggtgaagaagaagctgtctggctccctg
atggtgtctgtggaccagctcaatacctccttcgggcggaaagagcgggccaacagtgtc
atgagcgtcattaccaacacactagtggaggaactggaagagtcccagcgcaagtgtcca
ccgtgctggtataagttttcaaacacattcctgatatgggaatgctccccaacatggctg
aggattaaggagatcgtcaacctgatagtcatggatccctttgtggacttggccatcacc
atctgcatcgtcctcaacacgctctttatggccatggagcactaccccatgacacctgac
ttcgaggacatgctctatgtggggaatctggtgttcactgggatctttgctggagaaatg
atgttcaaactagtggccatggatccgtattactacttccaagaagcctggaattgtttc
gatggcttcatcgtgacactgagtttagtagaactggctctagctgacgtcgagggtctg
tcagtgctgcggtcattccgactgctgagagtgtttaagctggctaagtcatggccaact
ctcaatatgctgatcaagatcattggcaactctgtgggcgctttagggaacttgactctc
gtgttggccatcatcgtcttcatctttgccgtggtgggcatgcagctatttggaaagaat
tacaaagactgcgtgtgcaagatcgatgctgactgcgaactgccacgctggcacatgaac
gacttcttccactccttcctgattgtgttccgggtgctttgcggggagtggattgagacc
atgtgggactgcatggaggtggccggccagggcatgtgcctcattgtcttcatgatggtc
atggtcattggcaacttggtggtgttgaacctgttccttgccttgctgctgagctcattc
agcgcagacaacttggctgccactgatgatgacggcgagcttaacaatctacaaatttct
gtcattcgcatcaagaaaggcattgcgtggatcaaagccaaagtgcggctgctcgtggcc
agcctgctgaggaaaccacccatggaggacgagcagaagcctttggatgacatgtacgac
aagaagctgaactgtattgccaaccacacaggagtggacataaaccgagatctggactat
gcaaagaatggcaatggtacgaccagcggcattggcagcagtgtgggcaagtatatgatc
gacgaagaccacatgtcgttcatccacaaccccaacctgaccgtctgcgtacccattgcg
gtcggggagtctgactttgagaacctgaatacagaggacttcagcagcgagtcagacaat
gagaacagtaaagagctggacgacaccagctcgtcagagggcagcaccattgacatcaag
ccagatgtggaggaggtggtggtggtggagacggtggaggaatacatggaaccagaagca
tgctggacagatgcgtgcgtggctaagtacaagtgctgcgatgtcgacatcaccatgggc
tgggggaagagctggtggttcctgaggaaaacctgctacctgatcgtcgagcacaactgg
tttgagacgctcatcatctttatgatcctcctcagcagtggagctctggcctttgaggat
gtgtacattgagcagaggaaaaccatccggatcattttggagtacgcggaccgggttttc
acgtacatcttcatcctggagatgctgctgaaatgggtcgcgtatggtttcgtcaaatac
ttcaccaacgcttggtgttggctggacttcttcattgtggacgtgtctatagtcagcctt
gtagctaatgcgctgggctactccgatctagggcccattaaatcactcaggacactaagg
gccttgagacccctcagagccttgtcacgttttgaagggatgagggtggtagtcaacgcc
ttggtgggagccatcccttccattatgaatgtgttgctggtttgcctcatcttttggctg
attttcagtattatgggggtcaacctgtttgcgggcaagtactacttctgtttcaacgag
acctccgaggagtacttccctgttgacgtggtcaacaacaggagccagtgcgaggccctt
gtggaacagaattttacagaggtcaggtggaagaacgtcaaaatcaactttgacaatgtg
ggcgccggctacctggccttgctgcaagtggccacgttcaaaggctggatggacattatg
tatgcggctgtggattccagagaggtgggagaccagcctgactatgaagttaacatctac
atgtacatctactttgtggttttcatcatctttggctccttcttcaccctcaatctcttc
atcggtgtgatcattgacaacttcaaccagcaaaagaaaaagtttggaggtcaggatatc
ttcatgacagaagaacagaagaagtactacaatgccatgaagaaactgggctccaaaaag
cctcagaaacccatccctcgaccacagaacaagatccaaggaatggtgtttgactttgtc
acacagcaagtcttcgacatctccatcatgatcctcatttgtctcaacatggtcaccatg
atggtggaaacagatgaccaatccgacgagacagaaaatgtcctctactgggtcaacttc
atcttcattgtggtcttcaccacagaattcttgctgaaactatttgctcttcgccactac
tacttcaccaatggttggaacatctttgatgtggtggtagtcatcctatctattgttgga
atgtttctggcagaccttatcgagaagtactttgtatctccgacgctgttccgagtgatc
cgcttggctcgtatcggacgtatcctgcgtctcatcaaaggagcaaagggcatccggacg
ttactcttcgccctgatgatgtcactgccagccctgttcaacattggcctcttgctcttc
ctggtcatgttcatcttctccatcttcggcatgtccaactttggctacgtgaagcacggc
gccggcattgacgacatgtacaactttgagaccttcggcaacagcatgatcatcctgttc
atgatcaccacttcggccggctgggacggcttgcttctgcccatcctcaactacccgccg
gactgcaaccccaacctggagaaccccggcacctcggtcaagggcgactgcggtaacccc
tccgtggggatatttttctttgtcatgtacatcatcatttccttcctcattgtggtcaac
atgtacatcgccatcatcctggagaacttcagcgtggccacagaggagagcgcggatccg
ctgagcgaggacgactttgagaccttctacgagatctgggagaagtttgatcccaccgcc
tctcagttcatcacctttgccaaactgtcggattttgccgacgcgctcgagcacccgctt
cgcgttcccaagcctaacaccatcgagctgatcgccatggacatgcccatggtgagcggc
gatcgcatccactgcctggacatcctgtttgccttcaccaagcgcgtgctgggcgacagt
ggtgagttggacatgctgaggcagcagatggaggagcgctttgtggcggccaacccctcc
aaggtctcgtacgagcccatcaccaccacgttgcggcgcaagcaggaggacgtctcggcc
aggatcatccaaaacgcctaccgcgctcacctcatccgccgcggcatcattttcaagcgc
cacacgttcgcgaacaacaagcttgagaatgggggcaccaaccaggagaagaaggagagc
acgccatccaccgcctcgctcccttcgtacgacagcgtgaccaaacctgacaaggagaag
caagatgacaacaaggaggactgggccaggaaggagaaggacaaaaaccaaaaagacgag
tgggaatcaaagtgttag
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integrated database retrieval system
