Hippocampus comes (tiger tail seahorse): 109512397
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Entry
109512397 CDS
T04969
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
109512397 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcq03021
]
109512397 (pcf11)
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109512397 (pcf11)
Transcription machinery [BR:
hcq03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
109512397 (pcf11)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
109512397 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
109512397
NCBI-ProteinID:
XP_019719673
LinkDB
All DBs
Position
Unknown
AA seq
1541 aa
AA seq
DB search
MDCLLLNAYPRDKVGVAFPRSKMDDSAAREDACQEYQSSLEDLTFNSKPHINMLTILAEE
NVNFAKDIVAIIEAQISKAPAAEKLPVLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEK
VDENTRKSLFKLRSTWDEIFPLKKLYALDVRVNSVDPAWPIKPLPPTVNASIHVNPKFLK
QSEEAPSRPTPSQLPPPVIQSSLTQEQMIRQQLLAKQKQLLELQQKKIELELEQTKAQLV
GGFSLLTPTPVPLVTSPKPVGQPTPVVRPLIAPQPPSDPKLPTRDPRLNRIGPTGPLKNK
EKPAEQKEAPPTIVTPVVTPEKRAADKTLHSEKGRIPRKDEKLNTKSPPMTKNVQIKNKH
PEVESHKSTDSSKKDPRLKKRVLDKAGDSKDDEQKEKKRCSDKRDESARVTELPKAYRGR
LQNGLVTKREHSESAEKVGGNARTHARKRTRSRSKSRSPNSPKRKGRRSPKSRTRSTSLS
PSPSHKAGNPRRVRGDEPVHGKNTRDDRQAPKKNQVESRRSKTPVDERKTPVDERKTPVD
ERKTPVDERRTSSKTPADERRSSSKTPADERRSSSKTPVDERRSKSRESPRSHDGGNNQA
KDPLRWRSGWDENKHLKPGDSHTKQGTQRHKTYNTPTRPTTPRTPKHRLSVDANLQIPEV
LNSASKKDLLRRASKSLESGEISQEDFLNMAHKIKNFFQYQEEKQQRPENWDAAANFPGR
KTLLATPPEPLDQAQLTYFEHKSKLRKTQVAHRTAGEDWDGLEECEGPGRAPRDQEERRS
IEREESRPPLAPMIEEYNHGKEFPALKSLPGLRFRRRADPRESSEREWNSPLTERQREEQ
KSGYDAPRRYAPSAESRHPDPRRLDGSSHPSGLVVRNCPSPCALETPLTVFERERLSPLH
QRDMADMSPVPRFESPNSEHSDDGPLPSEPPLAPQSILQGPVLGALLSNIHQSSNSPGHT
PPHEGGPLPPCFDAPGNMGPSRPNPPGWYNEQSHFEGLHTGRPIHHNMPERFNGPHIPQG
PLRSTDNMGRFDGHLGPQVPQRFDGPGPGHFDNAVQCFDNNLGPSPVPMGLQRPMPFENP
ALRLEGSVIPMCYEGPGQPGPRFDLPPQGPHFDGPPGQQGPLRFTSIPMGPMPPPMYDNN
IPPHQNFPMAPQPFPDPINSQFHPAPMAFPTPPNLQPTANFNILPGPPFSQPGADPFFNP
AVASVNMQPPVNVLNMNQPFLPQNPAPFAQPAPQMAPTENHFGQVDVNDLLSKLISTGII
KGSQPDTTAPTCELPSACPEAPPVEEEEDEEVEDDFPDLTNFKLDDMKQRYESVVTKLYS
GNQCCLCSMRFTAAQTDLYADHLDWHFRQNHAGKVAGKKITHRRWYYGLTDWVEFEEIAD
LEERAKSLFFEKENEEEVQKNQAAAKEKEFQSVKAAKDQVAELCEICQEPFETYWVEEEE
DWFLKNAIRVDDKNFHPSCFEDYKNTSSYMDATPSPNKVLSEHPLGIFIKAEEDDNSQCC
TFEASIKQEADPEEGEGEHPAKKQKVEEPLLTDLQSEEDRL
NT seq
4626 nt
NT seq
+upstream
nt +downstream
nt
atggactgcctgctgctcaatgcgtaccctcgcgacaaagttggtgtagctttcccccgg
tcgaagatggacgacagtgcggcgagggaagatgcctgccaagagtatcagtcctcgctg
gaagacctcacgttcaacagcaagccgcacatcaacatgctgaccattctggccgaggaa
aacgtcaacttcgccaaggatatcgtcgcgataattgaagcacaaataagcaaggcccca
gcagctgagaagcttccagttttgtacttagtggattccatagtgaagaatgttggagga
gagtacctcgcagtgtttgctaaaaacctaatcacttcatttatatgtgtctttgaaaag
gtggatgagaacacaagaaagagtttgttcaagttgcgatcaacatgggacgagattttc
cctctgaagaaactgtatgcactagacgtacgtgtcaactctgtggatccggcgtggccc
atcaagcctctgccgcctacagtcaatgccagcatccatgtcaacccaaagtttttaaaa
cagtccgaggaagccccttctcggcctaccccttcacaactgcctccgccagtaattcag
tccagcttgactcaagagcagatgatcagacagcagctgttggccaagcagaagcagctt
cttgagcttcagcagaagaagattgagctggaactggagcagaccaaggcacagctggtg
ggaggattttcattattaacaccaaccccagtaccgctcgtgacatcaccgaagccagtt
gggcagcctacccctgtggttcgacccctgattgcgcctcagcctccaagtgaccctaaa
ttacccactagagacccgcgtctgaaccgcatagggcccacaggacctttgaaaaacaaa
gagaagcctgctgagcaaaaggaagcccctcctacaatagtaactcctgttgtaacgcca
gagaaacgagcagctgataaaacacttcattcagaaaagggacgcatcccaagaaaggat
gagaagctcaacacaaagtctcctccaatgactaaaaatgttcagattaaaaacaagcat
cctgaagttgagagccacaagtctacagacagctcaaagaaagacccccgtttgaagaaa
cgtgtcctggacaaggctggagatagcaaagatgatgagcaaaaggagaagaaaagatgc
agcgacaagcgagatgagtcggcacgggtcaccgagctgccaaaagcctacagaggaagg
ctgcagaacggcctggtgaccaaacgtgagcacagtgagtctgcagagaaggtcggcggc
aatgcccgaacacatgccagaaaacgcacgcgctctaggtccaaatcgcgctctccgaac
tctccaaagagaaaaggcagaaggtcacccaagagcagaaccaggagcacctccttatca
ccgtcgccatctcacaaggcaggaaaccccaggagggtcaggggtgatgaaccagtgcat
ggaaagaacacgcgagatgatcgacaggcgcccaagaaaaaccaggtggagagcagacgc
tccaagacgccggtggatgagcgcaagacgccggtggatgagcgcaagacgccggtggat
gagcgcaagacgccggtggacgagcgccgcacatcctccaaaacgccggcggacgagcgc
cgctcatcctccaagacgccggcggacgagcgccgctcatcctccaagacgccggtggac
gagcgccgctccaagtccagagagtctccacggagccacgacggaggcaataaccaggcc
aaagatcctctccgctggaggagtggctgggatgagaacaaacatcttaagcctggagac
tcacacacaaagcagggaacccagaggcacaaaacctacaacactccaacccgacccacc
accccccgtaccccgaaacaccgtctcagtgtggacgccaaccttcagatacctgaagtc
ctcaactctgcgtccaagaaagacctgctcagaagagcaagcaagagcttggagagtggt
gagatttcacaggaggacttcctgaacatggcccataagatcaagaacttcttccagtat
caggaggagaagcaacagcgtccagaaaattgggacgctgccgcaaactttcctggcagg
aagacgttgctggccacgcctcctgagcccttggaccaggctcagttgacttactttgag
cacaagtccaagctgaggaagacgcaggtggcgcaccgcaccgccggagaagactgggat
ggtttggaggaatgtgaagggccaggccgggcaccacgggatcaagaagagaggagaagc
atagaacgtgaggaatccagacctccgctcgcccccatgatagaggagtacaaccacggc
aaagagttccccgcgcttaaatctctgccaggccttcgcttcaggaggagggctgacccc
agagagtccagtgaaagagagtggaactcccccttgactgagcgtcaacgtgaggaacag
aagagcggctatgacgctccgcggcggtacgccccgtcagccgagtccaggcaccctgac
ccacggcgtctggatggatcctcccaccccagcggcctggttgtcaggaactgtccgagc
ccgtgtgctctggaaactccgctcacggtgtttgagcgtgaacgtctctcaccgctccac
cagagggacatggcggacatgagccctgttccacgctttgagagtcccaacagtgaacac
tcagatgatgggccgctcccttccgaaccacccctcgcccctcaatctatcctccagggg
cctgtgcttggtgcgctgttgtctaatattcatcagtcaagtaattccccgggacacacc
cctccgcacgaaggtggccccctacctccctgctttgacgctcccggaaacatgggcccg
tctagaccaaaccctccaggctggtacaatgagcaatcccactttgagggtcttcacaca
ggcaggcccattcatcacaacatgccagagaggtttaacggaccacacattccacaggga
ccattgagaagcacggacaatatgggtcgctttgacggtcatttgggcccacaggttccc
caaaggtttgatggaccggggcctggacactttgacaatgcagtccaatgctttgacaac
aacctgggtcccagtcctgtaccaatgggcttgcagcggccaatgccctttgagaaccct
gcattgcggttggaaggctctgtcattccaatgtgttatgagggacccggccagccgggg
ccacggtttgacctacctcctcagggcccgcactttgacgggccacccggccaacagggc
cccctaagattcacatccataccgatggggccgatgcctcctcccatgtacgataacaat
atccccccccatcaaaacttcccaatggccccgcagccattcccggaccccatcaactct
cagttccaccctgccccaatggcgttccccacaccgccgaacttgcagcccacggctaac
tttaacatcctgcccgggcctccgttcagccagccgggcgccgaccccttcttcaacccc
gccgtagcttcagtcaacatgcagccgccggtgaacgtgttgaacatgaaccaacctttc
ctgcctcagaacccagcgccttttgcacagccagccccccaaatggccccaacagagaac
cacttcggtcaggttgacgtcaatgacttgctttccaaactcatctccaccggcatcatc
aaagggtcgcagcccgacacgacagcccccacgtgcgagttaccctcagcgtgtccagag
gcgcctcctgtagaggaggaagaggatgaggaggtggaggatgatttccccgacctcacc
aacttcaagctcgacgacatgaaacaacgttacgagagcgtcgtgaccaaactgtactcg
gggaaccagtgctgcttgtgcagcatgaggttcacagccgcacagactgacctgtacgct
gaccacctggactggcacttcaggcagaaccatgctggcaaggtggccggcaaaaagatc
acgcaccgccgctggtattacggcctcacggactgggttgagtttgaggagatagctgac
ctggaggagcgagccaagagcttgttctttgagaaggagaatgaggaggaggtacagaag
aaccaggcggcggccaaagagaaggagttccagagtgtcaaggccgctaaagatcaagtc
gcggagttgtgcgaaatctgccaggagcctttcgagacatattgggtggaggaagaggag
gactggttcctcaagaatgccattagagtcgacgataagaacttccatccttcctgtttc
gaggactataaaaacacatcttcgtacatggatgcaacgccatcgcccaacaaggtgctg
agcgaacacccgctgggcatcttcataaaggcagaggaagatgacaattcacagtgttgc
acctttgaggcctcgatcaagcaggaagctgatcctgaggagggtgaaggcgagcatcca
gcaaagaagcagaaagtagaggagccgcttttaacagatttgcaatcagaagaggacaga
ctgtga
DBGET
integrated database retrieval system
