Hippocampus comes (tiger tail seahorse): 109513526
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Entry
109513526 CDS
T04969
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109513526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109513526
03036 Chromosome and associated proteins [BR:
hcq03036
]
109513526
Enzymes [BR:
hcq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
109513526
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109513526
mRNA degradation factors
5'-3' decay
Decapping complex
109513526
Chromosome and associated proteins [BR:
hcq03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109513526
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
109513526
NCBI-ProteinID:
XP_019721598
UniProt:
A0A3Q2Y940
LinkDB
All DBs
Position
Unknown
AA seq
489 aa
AA seq
DB search
MATARTENVDPPAMGLNKQNGQLRGQTKPASVQPGSSTQPKVLGATQKAGTASQARGTIK
FGDDWKKSLQLPPKDTRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPVQEESI
PIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYIQAMVVVPTRELALQVSQICIQI
SKHLGGVKVMATTGGTNLRDDIMRLDEIVHVIVATPGRILDLIQKGVARVDRVQMMVMDE
ADKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMTNYLQKPYEINLMEELTLK
GITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAK
MMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGR
FGHFGLAINLITSEDRFNLKTIEDQLVTDIKPIPGSIDKGLYVAEFHSSAGDCEVEEVQE
RSGHQQDHT
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atggctaccgccagaacagaaaatgttgacccgcctgccatgggactgaacaagcagaac
gggcagctcagaggacagaccaaaccagcttcagtccagccaggatcctcaactcaacca
aaagtgttgggtgccacccagaaagcaggtactgcctcccaagcaagaggtaccattaag
tttggagacgactggaaaaagagcctccagctccctccgaaagacaccagggtcaaaact
tcagatgtgacagcaactaaggggaatgaatttgaagattattgtctcaaaagagaactt
ctgatgggcattttcgagatgggctgggagaagccatctcctgtgcaggaggagagtatt
cccattgcgctgtctggaagggatattttggctcgggcaaagaatggaacaggaaaaagt
ggagcctatctcatcccattgctggaaaggatagaccttaaaaaggactatatacaagca
atggtagtggtgccaactcgagagttggcgctgcaggtgagccagatctgcattcaaatc
agcaaacacctcggaggagtcaaagtcatggccaccaccgggggaaccaacctacgagat
gacatcatgcgcctggatgagatcgtgcatgtcatcgttgccacgcctggcaggattctg
gatttgatccagaaaggagtggcaagagtggatcgagtgcagatgatggtgatggatgaa
gctgacaagctgctgtctcaggattttgtggtgctcatcgaagatatcattagcttcctg
gccaagaataggcagatcctgctctactctgcaaccttccccatcagtgtgcaaaaattc
atgaccaactacctgcagaaaccgtatgagatcaacctgatggaggagctgacgctgaag
gggattactcagtattacgcctacgtcacagagagacagaaagtgcattgtctcaacaca
ctcttctccaggctccagatcaaccagtcgatcatcttctgcaactccacgcagagggtg
gagctcttagctaagaagatcacgcagctgggctactcctgcttctacatccacgctaag
atgatgcaggaatatagaaaccgtgtgttccatgacttcagaaacggactgtgcaggaac
ctggtctgtaccgatctcttcactcggggtatcgacattcaggccgtgaacgtggtcatc
aactttgactttccaaagaatgcagagacgtacctccatcgtattggaagatcagggagg
ttcggtcatttcggtttggccattaacctgatcacatcggaagaccgcttcaaccttaag
accatcgaggaccaactggtgaccgacatcaaacccattcccggcagcatcgataagggt
ctctatgtggccgagttccactcctccgccggtgactgcgaagtggaggaagtccaagaa
agatcaggacaccagcaggaccacacctaa
DBGET
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