Hippocampus comes (tiger tail seahorse): 109514229
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Entry
109514229 CDS
T04969
Symbol
col11a1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
109514229 (col11a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hcq00536
]
109514229 (col11a1)
Glycosaminoglycan binding proteins [BR:
hcq00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
109514229 (col11a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
109514229
NCBI-ProteinID:
XP_019722697
LinkDB
All DBs
Position
Unknown
AA seq
1813 aa
AA seq
DB search
MEMQRWSTRWKTKRWLMDSSVAAFVTLTLVLQTTGVSAAQQVDVLKVLEFQNYPEGVTKT
SGFCTNRRASKPDAAYRVGKQVQISAPTTQLFPEGVFPEDFSILTTVRPKSGLQSFLLSI
YNEQGVQQLGIEVGRSPVFLYEDQNGKPAPEDYPLFRTLNLADGKWHRVAISVEKKTVTV
IVDCKKKITMPLLRSDQTSISTNGITVFGTRILDEEFFQGDIQQLLIVDDSKAAYDYCEH
YSPDCDTPHGESLQAQQPQEEYTTDDLEYSQFYDYAEGPTDIVPTDDEYSEPQLNNVEGD
YNTGFDYGTVDDSQTQSPFATHGPSEAVEEDVVGVYVTEAPPVTPEPAVVPETAENVDAG
AEAYDLKEYDDLKEYDLGEVDNRLYDYGAYDEYGPTPSKSTAAYDEELGPGVAAETDVSQ
SAVAGAGGTFGQKGEKGEPAVIEPGMLIEGPPGPPGPAGLPGPSGLQGPPGAAGDPGDRG
PPGRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPPG
PMGLTGRSGPVGLPGSTGLKGESGDPGPQGPRGIQGPPGQTGKAGKRGRAGADGARGMPG
EPGSKGDRGFDGLPGLPGEKGHRGEPGPMGPPGSPGEDGQRGEDGEIGPRGLAGESGPRG
LLGPRGSPGPPGSPGIAGVDGPPGSKGNMGPQGEPGPPGQQGISGTQGLPGPQGPIGPPG
EKGPQGRSGLPGLPGADGPPGHPGKEGPPGEKGAQGPVGPQGPIGYPGPRGVKGADGVRG
LKGSKGEKGEDGFPGFKGDMGIKGDRGEVGMLGPRGEDGPEGPKGRSGPNGESGPIGPAG
EKGKLGVPGLPGYPGRQGPKGSSGFPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGARG
ARGPTGKPGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRG
ETGFQGKTGPPGPGGVVGPQGPTGETGPVGERGHPGPPGPPGEQGLPGAAGKEGAKGDPG
PQGSSGKDGPPGLRGFPGERGLPGATGPAGLKGGEGPQGPPGPVGSPGERGPAGSAGPIG
LSGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEVG
EPGQKGSKADKGEQGPPGPAGLQGPIGAPGPAGADGEPGPRGQQGMFGQKGDEGARGFPG
PPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPSGADGSQGPPGGVGPVGSVG
EKGEQGEAGNPGPPGEPGTGGPKGERGEKGEAGPPGAAGPAGAKGPPGDDGPKGNPGPVG
FPGDTGPPGEPGVAGTDGEPGEKGDDGETGQAGPPGPSGEAGPPGPPGKRGPPGAAGAEG
RQGEKGAKGEAGSEGPAGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGASGQDGPPG
PMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSSGSKGDGGISG
SAGPLGPPGPPGLPGPQGPKGAKGSTGPAGTKGDNGAIGPPGPPGPPGEVIQPLPVRSPK
KTKRSSDMQSDAAGTFMDYGEGMEGIFSSLNNLKQDIERMKYPMGTQNNPARTCKDLQLC
HPEFPDGEYWIDPNQGCSGDSFKVYCNFTAGGETCIYPDKKSNGVRISSWPKEVPGSWFS
EFKRGKILSYVDSDGNSINMVQMTFLRLLTASARQNFTYSCHQSVAWHDATSDSYDKSLR
FLGANDEEMSYDNNPYITALSDGCATRKGYGKTVMEINTPKIDQVPIIDVMLTDFGDPNQ
KFGFEVGPVCFLG
NT seq
5442 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcagaggtggtccacaaggtggaaaacgaaaaggtggcttatggattcctct
gtagctgcatttgttacgttaaccctggttctgcagacaaccggtgtctcagcagcacag
caagtggatgtgctcaaagtattagaatttcaaaattaccccgaaggagtgacaaaaaca
tcaggattttgcacaaaccgaagagcatcaaagccggacgctgcttacagagttggcaag
caggtccagatcagtgcgcccaccacgcagctattccccgaaggtgttttccctgaggac
ttctccatcttgacgacagtgcgccccaagtctggcctccagtccttccttctgtctatt
tacaatgagcagggggtccagcagctggggatagaagttggacgctcacctgtcttcctg
tatgaggatcagaatggcaagccagccccggaggactaccctctgttccgtacactgaac
cttgccgatggaaagtggcatcgcgttgcgattagtgtggagaaaaagacagtcaccgtc
attgtggactgcaagaagaagatcaccatgcctctcctcagaagtgaccagacctccatc
agcaccaatggcatcaccgtctttggcaccaggatccttgatgaggagtttttccagggc
gacatccaacaacttctgatcgttgatgattccaaagcggcatacgactactgtgaacat
tacagcccggactgtgacaccccccatggcgaatccctgcaggcccagcagcctcaggaa
gagtacactaccgatgatttagaatactctcagttctatgattatgctgagggccccact
gacatcgttccgaccgatgatgagtattctgagccgcagctaaacaatgtagaaggagat
tacaatacaggctttgactacggaactgtagatgattctcagactcagtccccctttgcc
acgcatggacccagtgaggctgtggaggaggatgttgtcggtgtctatgtcaccgaagcc
cctcccgttacgccggagcccgccgttgtcccagaaacggcggaaaacgtggacgctggc
gcggaagcatatgacttgaaggaatatgatgacctaaaggagtatgacttgggagaggtt
gacaacaggttgtatgattatggggcatatgatgagtacggccccaccccctctaaatct
actgccgcctatgacgaggaattggggcctggggtggctgctgaaacggacgtttcccag
agcgccgttgctggagctggaggaacctttggccaaaagggagagaagggcgagcccgct
gtgattgaacctggcatgctgattgaaggaccaccaggaccccctggtccagctggtctt
cctggtccctcaggcctacaagggccacctggtgctgctggagatcctggtgacagaggt
cctcccggtcgtgctggtttgcccggtgctgacggcctgcctgggccccctggtaccatg
ctgatgctgccgttccgctttggcggcgatggtgagaaaggtccggtggtgtcggcccaa
gaagcccaagctcaggccatcctttcccaggccagactggctatgaggggccccccaggg
ccgatggggttgacaggaagatcggggccagtgggtctacctggatcaactggactgaaa
ggcgaaagtggagatcctggtcctcaggggccccgtggcatccaagggccaccaggacaa
accggaaaagctggcaagaggggtcgtgccggagccgacggagcacgtggaatgcccgga
gagccaggcagcaaaggtgaccgaggctttgatgggctccccggactgcctggtgaaaaa
gggcacaggggtgagccaggaccaatgggaccgccaggttctcctggagaggatggacag
agaggtgaggatggagagatcggacccagagggttggctggggagagtggtccaagaggt
ctcctgggacctcgcggttcccctggccctcctggctcacctggtattgctggagttgat
ggacctccaggttcaaaaggaaacatgggaccacaaggagaaccaggaccaccgggccaa
cagggaatttcaggcactcagggtcttcctggtccccaaggccctattggacctcctggt
gaaaaaggtcctcagggcaggtcagggttgcctggactacctggtgcagatggaccccct
ggtcatcctggcaaggagggtccacctggagaaaaaggagcccaaggtccagtgggcccg
cagggtccgatcggctaccctgggcctcgcggtgtcaagggtgctgatggtgtgagaggg
ctgaaaggttcaaagggagaaaagggtgaagatggtttcccaggtttcaaaggtgacatg
ggaatcaaaggagaccggggtgaggttggcatgttggggcctcgtggagaggatggtcct
gaaggtcccaagggaagatcagggcccaatggagagtcaggtcccataggtcctgctgga
gagaagggtaaactgggagtaccgggattgccaggatatccaggaagacaaggaccgaag
ggctccagtggtttccctggattcccaggggccaatggagagaaaggtgccaggggtgtt
gcaggcaaacctggtccaagaggacaaagggggccaacgggtcctcgtggggctcgagga
gctcgaggcccaacaggaaagccaggccccaagggtacatccgggaatgacggtcctcca
ggcccgcctggtgagagaggacctcaaggacctcaggggcctgtgggcttccctggacca
aagggaccacctggaccacctggaaaggatggactgcctggacacccaggccagcgtggc
gagacgggttttcaaggaaaaactggtccgccaggcccaggaggcgttgttgggccccag
ggacccactggagagactggtcctgttggtgagagaggccaccctggacctcctggtcca
cccggagagcaaggtctccctggagctgctggaaaagaaggagcaaagggagaccccggg
ccgcagggttcctctggcaaggatggtccccccggcctcagaggttttccaggcgagaga
ggcctacctggtgccacgggtcctgcaggtctgaagggaggagaggggccccagggtcca
cctggtcctgttggttctcctggtgagagaggtcccgccggttcagcaggtccaatcggc
ctgtctggcagacctggccctcaaggtcccccaggtcccgctggggagaaaggggcacct
ggtgagaaaggtccccaaggtccagctggccgtgatggcgtccagggtcccgtgggcttg
ccgggacctgccggaccacaaggtccacccggagaggatggtgataagggagaggttggc
gagccgggccagaaaggaagcaaagctgataagggagaacagggtccgcccggaccagca
ggtcttcaaggtcccattggtgccccaggtcctgctggagctgatggagagcctggtccc
agaggtcagcagggtatgtttggacagaaaggtgatgaaggagccagaggtttccctgga
ccacctggtcccatcggcctgcaggggcttccaggacctcctggtgagaagggagaaaac
ggtgatgttggccccatgggtcctcctggcccccctggtcctcgaggtcctcagggtcct
agtggagctgatggctcacaaggtcctccaggcggcgtgggtcccgttggctcagtggga
gaaaagggtgaacaaggtgaggccgggaaccccggaccacctggagagcccggcactggg
ggacccaaaggcgagagaggagagaagggagaagcaggacctcctggcgctgctggaccc
gctggtgccaaaggtccccccggagatgatggcccaaagggtaaccccgggcccgtcgga
ttccctggagacactggtcctcccggagagccaggtgttgctggcacagatggagaacca
ggagagaagggagacgatggtgaaactggccaggcaggacccccaggtccatcaggggaa
gctggcccacctggacctcctggcaaaagagggcctccgggagcggctggtgctgaaggc
agacaaggagagaagggcgccaagggtgaggctggctccgaaggtccagcgggtaaaact
ggacctgttgggcctcagggacctgccggaaagcctggtccagaaggtctccgtggaata
cctggccctgttggtgaacaaggacttcccggtgcttcgggacaagacggcccacctgga
ccaatgggtcctcctggacttcctggtctgaaaggtgacccaggctccaagggtgaaaag
ggacatccaggtttaatcggtttgatcgggcctcctggtgaacaaggagaaaagggagac
cgaggtttgcctggaccgcaagggtcatctggtagcaaaggagacggtggtatcagtgga
tcagcaggtcccctcggtccccccggcccccctggtctacctggtcctcaaggtccaaag
ggagctaaaggttcaactggtccagccggtactaaaggagataatggtgccattggacct
ccaggtcctcccggcccaccgggtgaggtcatccagccactgcccgtccgttcccccaag
aagaccaaacgttccagcgatatgcagtccgacgcggccggtaccttcatggattacggc
gagggcatggagggcatctttagctcactcaacaaccttaaacaagatattgagcgcatg
aaataccccatggggacacagaacaacccagccagaacatgcaaagatctgcaactctgc
cacccagagttccctgatggtgaatactggattgatccaaaccaaggttgctcaggggat
tctttcaaagtctactgtaactttactgctgggggagaaacatgcatctacccagataag
aagtccaatggggtcagaatatcctcatggcctaaagaagttcctgggtcatggttcagt
gaatttaagcgtggtaaaatactttcctacgtcgactcggatggcaactcgattaacatg
gtgcagatgaccttcctcagactactgacggcctcggcaaggcaaaacttcacctacagc
tgccaccagtcggtggcatggcatgacgccaccagtgacagctatgacaagtcgctgcgc
ttcctgggtgccaatgacgaggagatgtcctacgacaacaacccttacattacggccctc
tcagacggatgtgcgacgaggaagggctatggaaagactgtgatggagattaatactccc
aaaatcgatcaggttccaatcatcgatgtcatgttgactgactttggggacccaaatcag
aagttcgggtttgaagttgggccggtctgctttcttggctaa
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integrated database retrieval system
