Hippocampus comes (tiger tail seahorse): 109514883
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Entry
109514883 CDS
T04969
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
hcq01001
]
109514883 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
hcq04054
]
109514883 (ciita)
Enzymes [BR:
hcq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
109514883 (ciita)
Protein kinases [BR:
hcq01001
]
Serine/threonine kinases: Other
TAF1 family
109514883 (ciita)
Pattern recognition receptors [BR:
hcq04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
109514883 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
LRR_14
AAA_16
nSTAND_NTPase5
DUF815
nSTAND3
AAA
NB-ARC
AAA_22
ORC-CDC6-like
DUF87
TsaE
NPHP3_N
SRP54
ABC_tran
Arf
VapE-like_dom
nSTAND6
AAA_7
AAA_30
Motif
Other DBs
NCBI-GeneID:
109514883
NCBI-ProteinID:
XP_019723864
LinkDB
All DBs
Position
Unknown
AA seq
1173 aa
AA seq
DB search
MQATDYDQDLCPDYGALPGRTMQATDYDQDLCPDYGALPDDLSEFMNDSYLVNMLDADGL
FADDPMLIFDGDDLDDTPLTKELPGQHGNQQVDQIKPKGKNNILQKRPRATLSKRSTKKQ
KAEGSDTGSMPSQGDLSCLSTAPQSILHLQSSIQFVTFPAATSYQLKMQTTRPPVGRLPY
PVAAAPTCILVHVSPSPSVSKLQVPPFSPEDSAVVPAQMSSPPSGTLSDTTSKVICPPCD
YDGASISEMTQRNASNTVQQSPTTFDLPESVKNYIRIAKAQMHQICEEMEPRLNLSSHYV
DVQVIQRESFCSGKKKNKCPNKDLLAMGDTDRQKRRIKLNQIFEKSTGDKPKRHILLLGK
AGMGKTTLIRKLCHDWSRDGLPQFDFVFLLDGKDLISSRKSCCGLQTLLLDHATVATSVI
NTEEVYAQVLASPKRVLIIFDGFDSRDYDILFQEKNLTALFERETKAKSFTVRQLYSAIL
QRVLLPGCFLLISARPKGTTACPLAQRMDCLLEAHGFTLPNIEAYFSRYFADPDLRDSAL
KCFEKSSYLRHLCWNPGICRLVCLVLEHTEGSEGLPRTLTELCHQVLCIKIKNDNRGRCP
WAESQGSRRAQVKKRTGQSRGKDPIETDEIKTAHGEIGEKEMLSRLSSLAWEGVKANVSV
LPQEASSCSKLKTFGLGKGFFRAHHATAGQLGSCCERKEREGEVERLFESENAEQRQHRR
RTHIEENVSDDDVLMWMDPFLQSYLAGLHLSTARNVWSQYFLQNLLSQPGLKGRRRPQGE
VQELTRRFAFGILFLKPTELRKLHLDINSGKRALFTERFEGLSLADLGPDQVLEVCHYAF
EASFSYDNGGGDGGEAPLVTHLAENLPEVLTFRGVPLGPLDAYVVQKILERAENGGRTFS
LDLENTGIPIPGLRSLVGLGSCTTYRACIADVIALWEQLEQSGERKPLQHFVTKFKIHPM
KVMQVRQIEHLAKLVNIHTHGRLSDCLGELDAILENGVPAVKELRKLEFEIGPERGPQAI
PKLWEFLPNLHDLQHLDLEGNKIGDNGAEQLANHFASLCFLQILNLSQNYIGDDGVKKMA
TALKDLPKLHCLILYSNVICDEGAATLAAVLPHMASLTDLDVKYNKLSDVGAQCLGASLR
KCQKMKTLRMWNQSIPYGIFERLQHQDPRILWH
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcaacagattacgaccaagatttgtgtcctgactatggagctttaccaggtcgc
acgatgcaggcaacagattacgaccaagatttgtgtcctgactatggagctttaccagat
gatttatcagaattcatgaatgacagttacctggtgaatatgcttgacgcagatggcctc
ttcgctgatgatcccatgttgatttttgatggcgatgacttagatgacactcccttgaca
aaagagctgcccggccaacacggaaaccagcaggtagatcagattaaaccgaaaggaaaa
aataacattcttcaaaaaagacctagagccacattatcaaaacggagcaccaaaaaacaa
aaagctgaaggcagtgacacaggctcaatgccgagtcagggagatctttcgtgtctctcc
acagcaccacaaagcatccttcatctccaaagctccatccagtttgtcaccttcccagcc
gctacatcttatcagttgaagatgcaaacgactcgtcctccagttggccgcctcccatat
cccgtcgctgctgcaccaacatgcatattggtacacgtatctccttcgccatcagtatcc
aaactccaggtgccacccttttccccagaggacagtgcagtagtaccggcccaaatgagc
tcacccccatccgggacattgtcggacaccactagcaaagtcatctgtccaccttgtgat
tacgacggtgcctccatttcagagatgactcaacgtaatgcgtcaaacaccgttcagcag
tctcccactacgttcgatttacctgaaagtgtcaagaactacatccgaatcgccaaagcc
caaatgcatcaaatctgcgaggagatggagccaaggttgaatttgagcagtcattacgtg
gatgtgcaagttatccagagagagtcgttttgctcggggaagaaaaagaacaagtgtccg
aacaaagacctgttggccatgggagatacggatcgacaaaaaagacggattaaattgaac
cagatatttgagaagtccaccggagataaaccaaaacgacatatcctcctgctcggtaaa
gcaggcatgggaaaaaccaccctcatcaggaagctgtgccatgactggagcagagacggc
ctcccccagtttgattttgtcttcttgttggacggcaaagatctcatctcttcaaggaag
tcgtgctgcggtcttcagactttactactggaccacgctaccgtcgccacttccgttata
aacaccgaggaagtgtacgctcaagtccttgcatcccctaaacgtgtgctgatcattttt
gatggatttgattctcgggattatgacattctgtttcaagaaaaaaacttgacagccttg
ttcgagagagagacgaaagcaaagtcctttacagttagacagctgtactctgccatcctc
caaagggtgctacttccaggatgctttcttctgatttctgccagacccaaaggcaccacc
gcctgcccactcgcgcagcgaatggactgccttttggaggctcatggattcacccttcca
aatatcgaagcatatttttccaggtactttgccgatcctgatctcagggactctgctttg
aaatgctttgaaaagtccagctatctacgtcatctttgttggaatcctggaatctgtcga
ctggtgtgcttggttttggaacataccgaaggctcagagggccttccgaggactttaact
gagctctgccatcaagtgctttgtattaaaattaaaaatgacaaccggggccgttgccct
tgggctgaatcgcaaggctcaaggcgagctcaggtgaagaaaagaacagggcagtcaagg
gggaaggatccaatcgaaaccgatgagattaaaaccgctcatggggaaattggtgaaaaa
gaaatgctgtcccgtttgagctctctggcctgggaaggagtgaaagccaacgtgtccgtc
ctcccccaagaagcaagttcatgctcaaaactcaagacattcggactcgggaagggattc
ttccgtgctcaccacgcgactgcaggacagctcggctcctgttgcgagaggaaggaaaga
gaaggagaagtggaaaggctatttgaaagtgaaaatgcagaacaaaggcaacatcgacga
cggacccacatagaagaaaatgtcagcgatgacgatgtcttgatgtggatggatccattc
cttcagagttacctggcaggactccacttgtccacggcaagaaatgtttggtcccagtac
ttcctccagaacctcctttcccagcctggcctaaagggacgccgacgtccccaaggagaa
gtgcaagagctcactcggcgttttgcgtttggcatcctgttccttaaaccaaccgagtta
cgcaagcttcatctcgacataaactccgggaagcgtgccttattcaccgaacgttttgag
ggtctttcccttgccgacctgggccccgatcaggtcctggaagtgtgccactatgctttc
gaagcaagtttctcgtatgacaacggcggcggtgacggtggcgaggcaccactggtcact
cacctggcagaaaacctaccggaggtcctcacgtttcgcggagtgccacttggcccgctc
gacgcatacgtggtgcagaagattcttgaaagggctgaaaacggaggtagaacattttct
ttggacctcgagaacaccgggataccgattccaggactcagatccctggtgggtcttggc
agctgcactacatacagggcctgcatcgctgatgtcatcgccctgtgggagcagttagag
cagagcggtgaaaggaagccccttcaacattttgtgaccaagttcaagatccacccaatg
aaggtcatgcaagtgcgccaaatagaacacctggccaagcttgtgaacattcacacgcac
gggaggctgtcggactgtctcggcgaacttgacgccatcctggagaacggcgttccagcg
gtcaaggagctacgcaaactggagttcgagattggtccagagcgcgggcctcaggctatc
cccaaactttgggagtttctcccaaatttacatgacctccagcacctcgatttggagggc
aacaagattggcgacaacggcgccgagcagttggctaatcattttgcctccctctgtttt
ctgcagatactcaatctgtcacagaattacatcggagatgatggggtcaaaaaaatggca
acagcattgaaagatctacccaaattgcactgcttaatcctctacagcaatgtgatttgt
gatgaaggtgccgccactttagccgctgtcctccctcacatggcatcattgactgacctc
gacgtgaagtataacaagctatcagatgtgggtgcacaatgtttgggagccagcctcagg
aaatgtcagaaaatgaagactttaaggatgtggaaccagtctattccgtatggcatattt
gagagactccagcatcaggatcccagaatcctttggcattag
DBGET
integrated database retrieval system
