Hippocampus comes (tiger tail seahorse): 109515519
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Entry
109515519 CDS
T04969
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03008
Ribosome biogenesis in eukaryotes
hcq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
109515519 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
109515519 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109515519 (xrn1)
03009 Ribosome biogenesis [BR:
hcq03009
]
109515519 (xrn1)
03016 Transfer RNA biogenesis [BR:
hcq03016
]
109515519 (xrn1)
03036 Chromosome and associated proteins [BR:
hcq03036
]
109515519 (xrn1)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
109515519 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
109515519 (xrn1)
Ribosome biogenesis [BR:
hcq03009
]
Eukaryotic type
Pre-60S particles
RNases
109515519 (xrn1)
Transfer RNA biogenesis [BR:
hcq03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
109515519 (xrn1)
Chromosome and associated proteins [BR:
hcq03036
]
Eukaryotic type
Gene silencing
piRNA pathway
109515519 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
109515519
NCBI-ProteinID:
XP_019724924
LinkDB
All DBs
Position
Unknown
AA seq
1676 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALDKGE
VLPTEARFDSNGITPGTEFMVRLQEQLKYFVHNKLSTDKLWQNVKIYLSGHETPGEGEHK
IMEFIRSETAKPLHDPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIHYEFSEVQHQLGSNYDLEQIIDDWILMSFLVGNDFIPHLPH
LHINHDALPLLYKTYINVLPGLDGYLNEKGHLNLGNFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGRAAEMEAASKQTHKEEDCSLSLAESTSSDRAIDGAEVPPVEEDD
EEDDMFETEFRQYKRTYYMTKMGVDVVSDAFLSKQAKCYVEGIQWILHYYYHGVKSWSWF
YPYHYAPFLSDIRNISELKLTFELGEPFMPFQQLLAVLPAASMELLPECYRHLMTSDTSP
IIEYYPTDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMESCNSKLTKEEKARNHHSECAL
YTYEREKDYTYLSAIPQLFPNIIHCHVRKENIPLDAWQVPLSHTGRSVDRSALYFCGFPT
LHHIKHKFNMKKSGVLVFQQSSRGDNMMLEILPTQEKELLCDDVAEQVLGKSVFVNWPHL
EEARIIAVSDGDTRFSLEEPPGVQRVYRSHSTPPPTRVTYLSDKEQRDWVKDIQGITEHY
LKRKGIVVNQTTVLLYGQLLTGRKYIPKSNGVVELEKQWAKQVLPFAFQTVVQDIEAFYS
SVTCFKSLEDLYPPLSTVFMVGNPYYAAMGEVQDSSDVIKDGRVRVVFNVPHEPQLELLI
QNQHKYCVKYSPGYVVASRLGISSYLVSRFSGSIFIGRGSKKNPCGEHKANVGLNLKFNK
KNEEVPGYTKRTEKEWLYSAAVEELLAEYLERFAEVFDTVSRNSHDDVFYEDDIWPGEDN
GAEKVAEIVTWLKSHPVSSISRASCDLQVLDAAIVEKIEEAVEKAKVKKSSKKVRDTVKA
HLLFRPLEQQQGVVPDPLADYRLFDRVVNVRESFTVPLGLRGTVIGMKGADREDEVLYEV
LFDEDFPGGLNIRCASPRCYRLPPCALMNLSHGARTDPTSHKLTAVVKPQPAAAGGCNSH
PLAASLNHSPRSPFISAQHNDKHGEGKSAYRGSKNSSSKAPLQKQPDKSKEAYVNVWQSL
QDCAPSHQPPAHWQKNASVGLIRLLKKNEDANSLLPQQNTVHKTSTEFEDLIASLKISKD
RQETAENLPPAPSQTSAGQSDGPLSPQSFAMKGTMVLKEMLKIDGAGGGSPAPPETAHDH
KQNKRRKSKKLAAQMTVAHGERAPSSPPVPLNQSSKVAELACVCVALGVAPPEFSFLCNR
QGVVVCQVKLSNGLTVHGPRCHSENDAKEKAAFFALQRLNSLGSGFPVQPPLFHGVARLQ
SPAMRAMPPVYNQSGALLMPPRGYAPAAPIWGMPLPPHHQPFPHQNPPFYGAAGTVPGAA
KQQPVPTLPVGSHHQFIPLQVTKKRMSANKKPQDTREFYSAAQSLTGNPTAQRGQDTPPG
QSRCLRDDNAPPSASVSTTTPPRQNRPAAGHAPGSASKRKHRKLAVNFQAAQLSDQ
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcccgaagttttatcgatggatttcagagcgttatccttgcctcagtgaagtt
gtcaaggagcatcagatcccagaatttgacaatctctatctggacatgaatgggatcatc
catcagtgttctcatccaaatgatgaagacgttcacttccgcatctctgaagagaaaatt
tttgcagacattttccattacttggaggtgctttttagaatcatcaagccacgcaaggtc
ttcttcatggcagtagatggtgtggcaccaagggcaaagatgaaccagcagagaggacgg
agatttcggtctgcaaaagaagcagaagagaaaataaaaaaagctctggataaaggagag
gtgttgcccacagaagctcgtttcgactcaaacggcatcaccccaggcacagagttcatg
gtgagactccaagagcagctcaagtattttgtccacaacaaactgtccaccgacaaactt
tggcagaatgtcaaaatctatttgtcaggtcatgagactcccggggagggcgagcataaa
atcatggaattcatacgttcagagactgcaaagccacttcatgaccccaacacccgccac
tgcttatatggccttgatgccgacctgatcatgttgggtttgaccagccatgagccaaat
ttctccctgctcagagaagaggtccgctttggaggaaagaaatcccagaaaaggataact
gcccctgaggagacaacgtttcatttgcttcacttgtctcttatgagggaatacattcac
tatgagttctctgaggttcagcatcagttgggttccaattatgacttggagcagataata
gatgactggattctgatgagcttcctcgtggggaacgacttcatccctcaccttcctcat
cttcacattaatcacgatgctctgccgttgttgtataagacttacatcaatgtgctaccc
ggcctagatggttatctgaatgagaagggccaccttaaccttggaaactttgagaaatac
ttggagaaactatctgagtttgatcgtgaacatttcagtgaggtgtttgtggacttgaag
tggtttgagagcaaagttggtaacaagtacctgaacgaggcggcgggccgtgcagcggag
atggaagctgccagtaaacagacccacaaggaagaggattgttctctctctctggcggaa
tccacgtcctctgatcgagcgatagacggcgcggaagtgcctcctgtcgaggaggatgac
gaggaagatgatatgtttgaaacggagttcagacagtacaagcgcacatactatatgacc
aagatgggggtggacgtcgtgtctgatgcttttctatccaagcaggccaaatgttatgtt
gaaggcatccagtggattctccactactattaccatggggtgaaatcctggagctggttt
tacccttaccactatgcgccgttcctgtccgacatcagaaatatttcagaattgaagttg
acctttgaactcggggaacccttcatgcctttccagcaactcttggcagtcttgcccgct
gccagcatggagctgttgcctgaatgttacaggcacctgatgaccagtgacacatcgccc
attattgagtattacccgacagacttcaaaacagacctcaacggcaaacagcaggagtgg
gaggccgtcgtgctcattcctttcatcgatgagaggtgtttgttagcagccatggagagc
tgcaattccaagttgaccaaagaagagaaagccaggaatcatcattcagaatgcgctctc
tatacgtacgagcgggagaaagactacacatacctctccgctattcctcagctcttccca
aacatcatccactgccatgtcaggaaagagaacattcctttggacgcttggcaagttcca
ctgagccacactggcaggagtgtggatcgctcggcgctgtatttttgtggcttccccacg
ctacatcatataaaacacaagttcaacatgaagaagagtggggtgcttgtattccagcaa
agtagcagaggtgacaatatgatgctggagatcctccccactcaggaaaaagaattgctt
tgtgatgacgttgctgaacaagtactggggaagtcggtgtttgtcaactggccacatctc
gaggaagcgcgcatcattgccgtgtcagatggagacaccaggttttctctcgaagaacca
ccaggggtccaacgagtctaccgcagtcattccacccctccccccaccagagtcacttac
ctctcagacaaggagcagagggactgggtgaaagacatccaaggaataacagaacactac
ctgaagaggaaaggcattgtcgtcaatcaaacaacggtgcttctatatggacagctgctg
acgggaagaaaatacatccccaaatcgaacggcgtggtggagttggagaaacagtgggct
aagcaggtccttccttttgcgttccagacggtggtccaggacatcgaggccttttattca
tctgtgacctgctttaagagcttagaagacctctatcctccactcagcaccgttttcatg
gtgggaaacccctactatgcagccatgggcgaggtgcaagattcgagtgacgtcatcaaa
gacgggcgtgtgcgtgtggttttcaacgtgccacatgagccccaactagagcttttaatc
cagaaccagcataagtactgcgtgaagtacagccccggctacgttgtggcatcccgtctt
ggaatcagcagctaccttgtgtcccgcttttccggaagcatcttcattggcagaggatcg
aaaaagaatccctgtggagagcacaaagcgaatgtcggcttgaacctgaagttcaacaag
aagaacgaggaggtccccggatacaccaagagaaccgagaaggaatggctttattccgcc
gccgtggaggagcttttagccgaatacctggaaagattcgcggaggtgtttgacacggtt
tcaagaaacagtcacgacgatgtgttctatgaagacgacatctggcccggagaagacaac
ggagcagagaaggtggctgaaatcgtgacgtggctgaaaagtcaccctgtcagctcaatc
agcagggcgtcatgtgacttgcaagtgctggacgccgcaattgtggagaaaattgaggag
gctgtggagaaagcaaaggtgaagaagagcagcaagaaagttcgcgacaccgtcaaggcg
catctcctctttcggcctttggagcagcaacagggggtggtcccggaccccttggccgac
tatcgcctctttgaccgcgtcgtcaacgtccgagagagcttcacggtgccgttgggtctc
cgaggcaccgtgatcggcatgaaaggagctgatcgtgaggacgaggttctctatgaggtg
ctgtttgacgaagactttccgggagggcttaatatcaggtgcgcatcgcctcgttgctac
cgccttcctccctgcgcgctaatgaatctgtctcacggcgcccgaacggatcccacgtcc
cacaaactcaccgccgtcgtcaaacctcagcctgccgccgccggcggctgcaactcgcac
cctctcgcggccagcctcaaccattccccacgttcgccctttatctccgcgcaacataac
gacaaacacggtgaggggaaatcagcctaccgaggcagcaaaaactcgagctcgaaggct
cctctccagaagcagccggacaagagtaaagaggcgtacgtgaatgtatggcagtctttg
caagactgcgccccttcccatcaacctcccgctcattggcaaaagaatgcctctgttggt
ctcattagattgttgaagaaaaacgaagatgccaattctcttttacctcagcagaacact
gtccacaagacgtcaacggagtttgaagacctgatagccagccttaagatctccaaggac
aggcaagagactgctgaaaatctacccccggcgccttcccaaacatccgccggccaatct
gatgggcctctatcaccacagtccttcgccatgaagggcaccatggtgttgaaggaaatg
ctgaagattgacggcgctggaggaggaagccccgcccctccggagactgcccatgaccac
aagcaaaacaagaggagaaagtccaaaaaattagcggcacaaatgacggttgcccatgga
gagagagcgccgtcgtctcctcccgtgccgctcaaccagtccagcaaggtggccgagctg
gcgtgcgtctgcgtcgccttaggcgtggcgccacccgagttcagctttctctgtaacaga
cagggtgtcgtcgtgtgtcaggtgaagctgtccaacggtttgaccgttcacgggcctcgg
tgtcactcggaaaacgacgctaaggagaaagccgccttctttgccttgcaacgactgaat
tccctgggatcgggtttccccgttcaaccgcccctgttccacggagtggcacgtttgcag
tccccggccatgagagccatgcctcccgtctacaaccagtcaggcgctttgctgatgccg
ccgcgaggttacgctcctgctgcccctatctggggaatgcctctgcccccccaccaccag
cctttcccccaccagaacccaccattttatggagctgccggaacagtccctggtgctgcc
aagcaacagccggtcccaactctgcccgtcggctcccatcaccagttcatcccattacag
gtgacgaaaaagcgaatgtcggccaacaagaagccccaagacaccagagagttttactcg
gcggcccaaagcctgaccgggaacccaaccgcacagagaggccaggacacacctccaggc
cagtctcgatgcctcagggacgacaacgctcctccatccgcgtcagtttccacgacgacg
ccccctcggcaaaataggccggccgcgggccacgcccctggctccgcctccaaaaggaag
cacaggaagctggctgtgaactttcaggcagctcagctgtcagaccagtga
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integrated database retrieval system