Hippocampus comes (tiger tail seahorse): 109515771
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Entry
109515771 CDS
T04969
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
109515771 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hcq03021
]
109515771 (polr1a)
Enzymes [BR:
hcq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
109515771 (polr1a)
Transcription machinery [BR:
hcq03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
109515771 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
109515771
NCBI-ProteinID:
XP_019725324
LinkDB
All DBs
Position
Unknown
AA seq
1688 aa
AA seq
DB search
MLFRKEVPWRRLEGMSFGMYSAEEIRKLSVKTITNSRMLDGVGNTLPNSLYDLALGPADN
KETCSTCCQDFSHCPGHLGHVELPLPVYNPLFFDKLYLLIRGSCLTCQMLTCPRAAIHLL
LNQLKLLDYGALQQVYQIEEVFSQFLEEKGKPTGDDIAAKLKEFTDSVVTSEISGNSKPI
KHLVERKASLINDFWKIHMQSRKCPNCRSKRFTIRREHNSKLIVTLPPDTQSILKPDGEL
MTGDRAYLTASTAREHINKLWKNEGFFLRCLFSGLVVNSGSDGEEKGFSPDLFFLELMVV
PPSRYRPINRLGDQMFTNGQTVNMQAVMKDSTIVRKLLSLMAAEKDTEEDESQAAEAADR
SFLAEIPGTTLTDKLYNMWIRLQTHINIVFDSDMDKIMPEKYPGIRQILEKKDGLFRKHM
MGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTPWNVKELRQAVLNGPNVHP
GATMVISEDGRRTILSPSNFAQREAVAKQLLTPCPGPHRMPMKLVNRHIKDGDVLLLNRQ
PTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAYTLVS
THQQYLVPKDGKPLAGLIQDHMVSGARMTIRGCFFTRDQYTELVYRGLTDKPGRVKLLRP
ALLKPQKLWTGKQVVSTLLLNVIPEKAVPLNLVGKSKIPGKSWIQVPPRATPGYQPDTMC
DSQVVIRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLFTAYLQLYR
GFTLGVEDILVKPGANKKRKRIIQESLKIGTRALQAAFNLPPDVDEAEAKSRWQDAHLNP
DQRDFSMADHKFKEVANQVNNDINKVCMPVGLHTSFPDNNLQLMVQSGAKGSTVNTMQIS
CLLGQIELEGRRPPLMPSGKSLPCFQPYDPAPGAGGFVSGRFLTGIKPQEFFFHCMAGRE
GLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDIPKTQFLQ
PRQFPFIEDNFEVIRKSQGLDEVLAQLDPQGASQHFSAIQRWKAKREVACPHRGAFLLFS
QKKMAKLKRTEQGAIQNVCGRDAAVLKLIEQWRALDEAGQSKYTRKSSRCPEPCLSVFRP
DLSFGSVSESFHDITEKYLQNRDTICQQGLDADRLRQLLHYKWQRSLCDPGEAVGLLAAQ
SIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASSNIKTPMMSVPVLNSKKALKR
AQKLRRKLTRVCLAEVLHKVNVVETLRIDRLPQSKMRTFKITFSFLQPDHYAGDKQLSPQ
QILHYMETRFFELLLKAIEKRSAKLASIAVETRRATLKDKDNDGNQVADIEGGGDGEEEP
EREIVDDQANEGDADASDAKRKDKQEEEVDYDSEDEGEDKDDVEEEDEAQENAEMSVEDS
QMESMGVKLQMRKKQPPSGGGQESLDQMRVNAVLNCHPAIEGYCYDLKYELWCELDLALP
VNKVHLDLTSVVSTLAQDAIIMETRGLTRCLLSETTTQTGEKEMVLNTEGINMYKMFEYS
DILDLNRLYSNEVHVMANTYGIEVALKVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEG
VYKPLNRHAIRSNSSPLQQMTFETSYKFLKQATMLGSCDQLVSPSACLVVGKVVKGGTGL
FELKQPLQ
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgctctttagaaaagaagtgccatggcggcgattggagggcatgtcttttggcatgtac
tctgccgaagagatcaggaagttgagcgtaaagacgatcaccaactcaaggatgcttgat
ggtgttgggaatacgctcccaaatagcctctatgacttggccctgggaccagcagacaac
aaagagacatgttcaacttgctgccaggacttcagccactgtccaggacacctgggacat
gtagagctacctcttcctgtttacaacccactattttttgacaaactctacctgttgatt
cgtgggtcgtgtctgacatgccaaatgttaacatgtccacgggcagccatccacctactg
ttgaaccaactgaaattactggactatggagccttacagcaggtttaccagatagaggaa
gttttcagccagtttctggaggagaaaggaaaacccactggtgacgatattgcagcgaag
ttaaaagagttcacagattcagttgtcacatctgaaatctcaggaaacagcaagccgata
aaacaccttgtcgaaagaaaagccagtttaataaatgatttctggaaaattcacatgcaa
agtcggaaatgtcccaattgcaggagcaagcggttcaccatccgacgtgagcacaacagt
aagctgattgtcacgctgccccctgacacgcaaagcattctcaaacccgatggggagctg
atgactggagacagagcgtacttgactgctagtactgccagagaacacatcaacaaactg
tggaagaatgaaggcttcttcctgaggtgtctattttctgggttggtggtcaactccgga
tcagatggagaggagaaaggtttttctccggatctcttctttctggagctgatggtggtt
ccaccttctaggtatcggccaatcaatcgactgggtgaccaaatgtttaccaacggtcag
acggtcaacatgcaagccgtcatgaaggacagtacaatcgtaagaaaactgctttctctc
atggctgctgagaaagatactgaggaagatgagtcccaggcagctgaagcggcagaccga
tcttttctcgcagagattcctggaacgacattaacggataaactttacaacatgtggatt
cgccttcagacccacatcaatattgtctttgacagtgacatggacaaaattatgccggaa
aagtacccaggaatcagacagatcctggaaaaaaaggatggattattccgtaaacacatg
atgggcaaaagagttgattatgctgcaagatctgtcatctgtccagatatgtacatcgga
accaatgagattggaattccaatggtgtttgcaacaaagctgacctacccacagcctgtc
acgccgtggaatgtgaaggagcttcgtcaggctgtcctgaatgggccaaatgtccaccca
ggcgccactatggtcattagcgaagatggcaggagaaccatcttgtcaccaagtaacttt
gcacaaagagaagcggttgctaagcagctgctcacgccctgtccaggtccacacaggatg
ccaatgaaattagtgaaccgtcatattaaggacggagatgtcttgttgttgaacagacag
ccaacgttgcaccgaccgtcaatacaggctcactgcgcacgcattttgccaggagagaag
gtcctgaggctccactatgctaactgcaaagcttacaatgcagactttgatggagatgag
atgaatgcccacttccctcagagtgagcttggtcgagctgaggcctacacgttagtcagt
acacaccaacagtaccttgtgccaaaggatggaaagcccctggctggcttgatccaggat
cacatggtttccggtgcacgcatgacaattcgaggctgtttcttcacaagagatcagtac
actgagcttgtgtacagaggactgactgacaaaccaggccgagtcaaactgctccgacct
gcattgctcaagccacagaaactctggacagggaagcaggtggtgtccaccctgctgctc
aatgttattccagaaaaggctgtgcctttaaatctggtcgggaaatcaaaaatccccggt
aaatcatggatccaagttcccccacgagcgactccaggatatcaacctgacaccatgtgt
gactcacaggtggttatccgtcagggtgaattgttagtgggcgttctggacaaagctcac
tacggctcctctgcatatggtctggtccattgctgctatgaactttatggaggggagacc
agcggcaaactgctcagctgtctggccaggctctttactgcttaccttcagttatatcga
ggattcacgctgggcgttgaggacattcttgtgaaacctggtgccaacaaaaagaggaaa
aggattatccaagaatcactgaaaatcggcacaagggccctccaggcagcattcaacctc
ccccctgacgtggatgaggcagaggccaagagccgttggcaggatgctcatctcaaccca
gaccagcgagattttagcatggctgaccacaaattcaaagaagtcgccaaccaagtgaac
aatgacattaacaaggtgtgtatgccagttggcctccacacgtctttccccgacaataac
ctccaactgatggtccagtcaggtgccaagggttccaccgtcaacaccatgcagatctcg
tgtctactaggtcagattgagttagagggtcgtagacctccactcatgccgtctggaaaa
tcactaccctgcttccagccgtatgacccagcgcccggtgctgggggttttgtttctggg
aggttcctcacaggcatcaaaccacaggaatttttcttccattgcatggctggcagagaa
ggactcgtggatactgctgtaaaaacgtccagatcaggatacctgcagaggtgtgttata
aagcatctggagggtttggtagtacagtatgatctgacagtgagggacagcgatggatct
gtagtccagttcctgtatggtgaagatgggcttgatatcccgaagacacagttcctgcag
cccaggcagtttcccttcatagaggacaattttgaggtaatacggaagtcccagggcttg
gatgaggtgttagcacagttggaccctcaaggtgccagtcaacatttttcagccatacag
cgctggaaagcaaagagagaggtggcttgtcctcacagaggagcattcctattgttttcc
caaaagaagatggccaaactaaagcggactgaacaaggcgcaatacaaaatgtgtgtggc
agagatgcagctgttctgaagctgatagaacagtggcgtgctcttgacgaagctggacaa
tcaaaatacacaagaaaatcctcccgctgccctgagccctgcctgagcgtgtttaggcct
gatctcagctttggatctgtttctgaaagttttcacgacatcaccgagaaatacttgcag
aatcgagacacaatatgtcaacaaggcttggatgcggacagacttcgacagctgttgcat
tacaagtggcaacggtcactgtgtgatccaggggaagcggtgggtctgctggcagctcag
tccatcggtgagccctctacccaaatgaccctcaacaccttccactttgctggcagggga
gagatgaatgtcacattgggaatacctcgactgagagagatcctgatggtggccagctcc
aacatcaaaactcccatgatgagtgttccagtgctgaacagcaagaaggcattaaagaga
gctcagaaactccgcagaaaactgaccagggtctgcttggctgaagtactgcacaaagtc
aatgtggtagagacactgcgcatcgatcgtctccctcagtcaaagatgcggacattcaaa
atcactttcagctttcttcagcctgaccattacgctggagataaacagctctcaccccaa
cagatcctccattacatggaaacgagattttttgaacttctcctaaaagccattgaaaaa
cgcagcgccaagctggcatctattgctgtggagaccaggagggccaccctcaaggacaaa
gacaatgatggaaatcaagtggctgatatagaaggggggggagacggggaggaagagcca
gagagagaaattgttgatgaccaggcgaatgaaggcgatgctgacgcctcagatgccaag
agaaaagacaagcaagaagaggaagtcgattatgatagcgaagacgaaggtgaggataag
gacgatgtggaggaggaagatgaggcgcaagagaatgcggagatgagtgtggaggactcc
caaatggagtccatgggtgtgaaattgcagatgcgaaagaaacaaccaccaagtggggga
ggacaggagtctctcgatcagatgagagtgaacgccgttctgaattgccatcccgcaata
gagggctactgctatgacctcaaatatgaactctggtgtgaattggacctggctttgcca
gtgaacaaagtgcacctcgacctgacgtcagttgtgtcaacactggcccaagacgccatc
atcatggaaaccaggggcctaactcgatgccttctgagtgagaccacaactcagactgga
gaaaaagagatggttctcaacacggagggcatcaacatgtacaaaatgtttgagtacagt
gacatcctggatcttaacaggctctattccaatgaggtccatgtcatggcgaacacctac
gggattgaagtggctctcaaagtcatagagaaagaaatcaaagatgtttttgctgtttat
ggtatcgaggtggatcccagacatttgtcacttgtggcagactacatgtgttttgaaggg
gtatataagccactgaaccgccatgccattaggtccaattcctcccctctgcagcaaatg
acttttgagaccagctacaaattcctcaaacaggctaccatgctgggctcttgtgatcag
ctcgtgtcgccatcagcttgcctcgtggtggggaaggtggtcaaaggaggaacaggactt
tttgagctcaaacaacccctgcagtag
DBGET
integrated database retrieval system
