Hippocampus comes (tiger tail seahorse): 109515843
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Entry
109515843 CDS
T04969
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hcq03041
]
109515843
Spliceosome [BR:
hcq03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
109515843
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
HAT_Syf1_CNRKL1_N
TPR_19
TPR_16
HAT_Syf1_CNRKL1_C
TPR_12
TPR_2
UTP6_C
TPR_15
TPR_MalT
ARM_TT21_N
TPR_21
HrpB1_HrpK
Motif
Other DBs
NCBI-GeneID:
109515843
NCBI-ProteinID:
XP_019725453
LinkDB
All DBs
Position
Unknown
AA seq
723 aa
AA seq
DB search
MATEGESSGKEGLGELSAMEAAKAPTLPLPEMSDENGCTDSATEASEAFAHADPASFSLP
PTTEDEAGDLPEDFERLWNAAHHNCQDFTSWTDLLQYCEQEGHVAASQRALMAFLGRYPL
CYGYWKKFADLERRAGNNDKAAEVCVQGLQSIPLSVDLWIHYINLLLGTLDMNQQESPKR
IRSVFEDAVVAAGLDFHSDRLWDLYVEWEKEQGNLRNATAVLDRVLKVPTQHYNTHYEKF
KAHLSSSDPKEVLSLEEYEEVRAFCRETQKVERAEQAKEKEKEMPPGEEEPATPEGTDSE
ELMQRMREQVLVRRDKIYQKNENEVRKRWNFEDTIKRPYFHVKPLDQIQLRGWHSYLDWE
LAQLSNDTVHRNEDADIKEATEGPEVTPQGTEETEVSLDDHRVRVLFERCLIACALYEEF
WTRYVQYLETRSVDDVRAVYKRACLHLSSSPNLHMRRATFEERHGDLAEARRVLEALDKN
MPGLAVVRLRRAALERRAGKLEQSEAILQEAVSQSKEKPTLHAFYSIKLARLLLKLGRNP
DRARSVLQEALEISPGNDKLHLNLLELEASSGPWSSADAVQECVTRALAAPLAPHTKLLL
SQRCLQFVEEYSNSVQSVLSVYEEHQKLLKELGGTKREAENRDEDREKVIKSDDAPTDDA
SAQVPPTDLQLPITVPPSPAMTMDVNAQSGGYGGYSNWYQQPQYSSYGYQNTWNYNQGYY
PPS
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggaaggcgagagtagcggcaaagaggggctcggagagctttcagccatggag
gctgccaaggctcccacgctacctcttccagagatgtcagacgagaacggctgcacagac
tcagccactgaggcctctgaggcctttgcgcatgcagaccctgcttccttctcactccct
ccaaccacagaggacgaggcaggcgatttgccagaagactttgaacgtctgtggaatgct
gcacatcacaactgtcaagacttcaccagttggactgacctgttgcaatactgtgagcaa
gagggccatgttgcagcatcccaaagagccctaatggccttcctcggacgctatccactc
tgctatggttattggaaaaaatttgctgatttggagcgtcgtgcggggaacaatgacaaa
gcagctgaggtgtgtgttcaaggcctccagtcaatccctttgagtgttgatctgtggatc
cactacattaatctgctgttgggaacactggacatgaaccagcaagagtcacctaagcgt
attcgcagtgtgtttgaggacgcggttgtagcagcaggcctggacttccactcggaccgg
ctgtgggatctgtatgtcgaatgggagaaggaacaaggcaacttgaggaatgcaacagct
gtgctagatcgagtcctcaaagttcccacgcagcactacaacacacactacgaaaagttc
aaggcccatctgagcagcagtgatcccaaagaagtgctttctctggaggagtatgaggag
gtgagagccttttgccgggagactcagaaagtggagcgtgccgaacaggccaaggagaaa
gaaaaggagatgccccccggggaggaagaacctgcaacgcccgagggcacagactcagag
gagctcatgcagaggatgagagaacaagtgttggttcgccgggacaaaatttaccagaag
aatgaaaatgaagttcgcaagagatggaactttgaagacaccatcaaacgtccttacttc
catgtgaagccgcttgatcaaatccagctgcgtggttggcactcctacctggactgggag
ctcgcccaactgagcaacgacactgtacaccgtaacgaagacgcagatatcaaagaggcc
acggagggcccagaggtgactccacaaggaacggaggaaacagaggtttcccttgacgac
cacagagttcgtgttctctttgagcgatgtctgattgcctgtgctctctatgaggaattc
tggaccaggtatgttcaatacctggagacgcgcagtgtggatgatgttcgggctgtgtac
aagcgagcctgtcttcacctgtcttccagtccgaaccttcacatgcgaagggccaccttc
gaggagagacatggtgacctggccgaggctcggcgtgtgctagaggctctggataaaaac
atgccaggtttggccgtagttcgtctccgcagggccgctttggagaggagggcgggcaaa
ctcgagcagtcggaagctatcctccaggaggcggtgagccaatcgaaagaaaagcccacc
ttgcacgccttctactccatcaagcttgctcggctgctgctgaagctcgggagaaacccc
gacagagctcgcagcgttttacaggaagcactggagatcagtccgggtaatgacaagctg
cacctgaacctgctggagttggaggcatcaagtggaccgtggtcttcggctgatgcggtg
caggagtgtgtgacacgagccctggcagcgcctcttgcaccgcacaccaaactcctcctc
tcacagcgctgcctccagtttgtggaagagtacagcaactctgtccagagtgtgctgtcg
gtttatgaagaacaccagaaactcctcaaagagctgggcgggacaaagagagaagcggaa
aacagagacgaggaccgagagaaggtgatcaaaagcgatgacgccccaacagatgatgca
tcggcacaagtcccacccactgatctccagctcccaatcactgtaccgccttccccggcg
atgaccatggatgtgaacgcccagtctggtggctatggcggatacagcaactggtatcag
caaccacaatacagcagttatggctaccaaaacacctggaactacaaccagggatactat
ccacccagctaa
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