Hippocampus comes (tiger tail seahorse): 109517414
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Entry
109517414 CDS
T04969
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq04140
Autophagy - animal
hcq04148
Efferocytosis
hcq05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
109517414 (vps39)
04148 Efferocytosis
109517414 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
109517414 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hcq04131
]
109517414 (vps39)
Membrane trafficking [BR:
hcq04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
109517414 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_2
Vps39_1
CNH
Clathrin
Motif
Other DBs
NCBI-GeneID:
109517414
NCBI-ProteinID:
XP_019728135
LinkDB
All DBs
Position
Unknown
AA seq
875 aa
AA seq
DB search
MHDAYEPVPILEKLPLQIDCMAAWEDWLLVGTKPGHLLLYRIKKDPATNLFEVTLEKSNK
NFSKKIQQLYVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFVCDLQQSSSGE
ETLRMCVAVKKKLQMYYWKDREFHELQGEFGAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGTIKELFPTGKQLEPLVTPLADGKVAVGQDHLTVVLNEEGICTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSVELQRPRFITSAGPDVVYVASNHFVWRLVPVSI
ATQIRQLLEDKQFELALQLAKMKDDSDGDKKQQIHHIQNLYAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPSDYRRQLHYPNPLPALSGVELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
MIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIYVWD
DKGPEFHNTLIQLYLERVQGLMKQYLNSLPEGVAAVPVGMEQGELGEFRNKLLSFLDISS
SYEPAQLISDFPFDGLLEERALLLGRMGKHEQALFIYVHILKDTRMAEEYCHSHYSSSVE
ADKDVYLSLLRMYLSPPDAHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRGFLESVLEEKAQRKRCNQVLKSLLQAEFLRVQEERIFHQQIKCVITEEKTC
RVCKKKIGTSAFARYPNGVVVHYFCCKDRNACPTE
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcctacgagccggtgccgattttggagaagctccctctccagattgactgt
atggcggcctgggaggactggctgcttgtcggtaccaagcctggacatctccttttgtac
cggattaaaaaggatccagccaccaatctcttcgaagtcacgcttgagaaatccaacaaa
aacttttccaagaagatccagcagctctacgtcgtctcacagtacaaaatacttgtcagt
cttctggagaacaacatccacgtccacgacctgctgacgttccagcagatcaccgtggtg
tccaaagccaagggagccacgctctttgtatgcgacctccagcaaagtagctcgggagaa
gagacgctgagaatgtgtgttgctgtgaagaagaagctgcagatgtactactggaaggat
cgagagttccatgagctgcagggtgagtttggtgctccggatattccaaagtctatggcc
tggtgcgagaactccatctgtgtcggcttcaaaagagactattacctcattcggatggac
ggacgggggaccattaaggagctctttcctactggcaaacagctggagccgctggtcacc
ccgctggccgacggcaaggtcgccgttgggcaggaccacctcaccgtcgtgctcaacgag
gagggcatttgcacccagaagtgcgccctgaattggaccgatatccccatagcgatggag
caccagcctccgtacatcatcgcggtgctgccccgctatgtggaaatccggaccttggag
ccccggctgctggtgcagagcgttgagctgcagagacctcgtttcatcacgtccgctgga
ccagacgttgtgtacgtggctagcaaccattttgtgtggcgcctggtgcccgtctccatc
gccacccagatccggcagctgctcgaggacaagcagtttgaactggcccttcagctggca
aagatgaaagacgactcggacggtgacaagaaacagcagatccatcacatccaaaacttg
tacgccttcaatctgttttgccagaagcgatttgacgactccatgcaggtttttgccaaa
ctgggcacagatcccactcatgtgatcggcctgtaccccgacctgctgccatccgattac
cgcaggcagctgcactaccccaatcctctgccggcgctgtccggggtggagctggaaaag
gctcacctggcactcatcgattacctcacccagaaacgcagccacctggtgaaacagctc
aacgactcggacccgtccaccacttcgccgctcatggagggcacgcccaccatcaaaagc
cgcaagaagctgctgcagatcatcgacaccacactgctgaagtgctacctgcacaccaac
gtggccttggtttcgcccctcctgcgcttggagaacaaccactgccacatcgaagagagc
gagtacgtcctcaagaaggcgcataaatacagcgagctcatcattctttacgagaagaaa
ggcctgcaccagaaagctctgcaggttcttctggaccagtccaccaaggccaactcgcct
ctgaagggccacgagcgcaccgtgcagtacctccagaggctgggagttgaaaatctgggc
atgatctttgagttctccccatgggtgctgaagatctgtcctgaagatggactgaagatt
ttcacggaggacctgaccgaggtggagacgttgccgcgagacaaggtgctcaacttcctg
aaggagggcttcaaggaactggccatcccatacttggaacacatcatctacgtgtgggac
gacaagggccccgagtttcacaacaccctcattcagctctacctggagagggtccaaggc
ctgatgaagcagtacctcaactcgctgccggaaggagttgcggctgtgccggtggggatg
gaacaaggcgagctaggagagtttcgaaacaagctgctgtcatttctggatatttccagc
agttacgagccggcgcaactcatcagcgacttcccctttgacggtctcctggaggaacga
gccctgctcctgggtcgcatgggaaagcacgagcaggcgctcttcatctatgtgcacatc
ctgaaggacactcgcatggctgaggaatactgtcacagccattacagcagctccgtggaa
gccgataaagacgtgtatctgtccctgctgaggatgtacctgtcccctccggacgcgcac
tgcctggggcccatcaagatggagctgtcggaaccacaggccaacctccaggccgctctg
caggtcctggagctgcaccacagcaagttgaacaccaccaaggccatcaacttgctgcca
gccaacactcagatccgcgagattcgaggcttcttggagagtgtgcttgaggagaaggct
cagaggaaacgctgcaaccaggtgctcaagagtctcctgcaggcggagttcctcagggtg
caggaagagcgcatcttccaccagcaaatcaaatgtgtcatcacggaggagaagacgtgc
agagtgtgcaagaagaagataggaaccagtgcgtttgccagatatcccaacggcgtggtg
gtgcactacttctgctgcaaagaccgcaacgcatgtcccaccgagtaa
DBGET
integrated database retrieval system
