KEGG   Hippocampus comes (tiger tail seahorse): 109518375
Entry
109518375         CDS       T04969                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein isoform X1
  KO
K12857  Prp8 binding protein
Organism
hcq  Hippocampus comes (tiger tail seahorse)
Pathway
hcq03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:hcq00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    109518375 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:hcq03041]
    109518375 (snrnp40)
Spliceosome [BR:hcq03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    109518375 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    109518375 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 Beta-prop_EIPR1 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_SCAP ANAPC4_WD40 Beta-prop_SPT8 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 eIF2A Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Cytochrom_D1 Beta-prop_IFT140_2nd WDR54 Beta-prop_Nup120_160 Beta-prop_VPS8 WD40_like
Other DBs
NCBI-GeneID: 109518375
NCBI-ProteinID: XP_019729733
UniProt: A0A3Q2XH23
LinkDB
Position
Unknown
AA seq 348 aa
MIEPKKRVADMAVVPSASLKRPRTELVAAAQSQQLVAAGPPRSSSLQAPIMLMSGHEGEV
YCCKFHPNGATLASSGFDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSAST
DKTVGVWDSETGERIKRLKGHTSFVNTCYPARRGPQLVCTGSDDGTVKLWDVRKKGAIHT
FQNTYQVLAVTFNDTSDQILSGGIDNDIKVWDLRQNKLMYNMHGHGDSVTGLSLSSEGSY
LLSNSMDNTVRIWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSTDGSKIAAGSADRFV
YIWDTTSRRILYKLPGHAGSVNEVVFHPEEPVVLSGGSDKRLYMGEIQ
NT seq 1047 nt   +upstreamnt  +downstreamnt
atgattgagccgaagaagagagtggcggacatggcggtggtgccctctgcttccttgaag
agaccccggacggagctggtggcggcggcccagtctcagcagctcgtggccgcggggccc
ccgaggtcgtccagcctgcaggcccccatcatgttaatgtcgggccacgaaggcgaagtg
tattgctgcaagtttcaccctaacggagccaccctggcgtcgtccggctttgacaggctc
atattgatgtggaatgtgtatggcgactgcgacaactttgcaacgctgaagggtcacagc
ggagcagtgatggagttgcactacaacacagacggaagcctgctgttctctgcgagcaca
gacaagacggtgggcgtgtgggacagcgagacgggcgagcggatcaagcggctgaagggc
cacacctccttcgtcaacacctgctaccccgcccgcaggggaccccaactcgtgtgcacc
ggcagcgacgacgggaccgtcaagttgtgggacgtgcgcaagaaaggcgccatccacact
ttccagaacacctaccaggtgctcgccgtcaccttcaacgacacaagtgaccaaattctg
tccggaggcatcgacaacgacatcaaggtgtgggacctgagacagaacaagttgatgtac
aacatgcacgggcacggtgactccgtgaccggactcagtctcagttcggagggatcttac
cttctctcaaactctatggacaacaccgtgcgtatttgggacgttcgaccttttgcgccc
aaggaaagatgtgtgaagattttccagggcaacgtacacaactttgaaaagaatctgttg
aggtgctcgtggtccactgacggtagcaaaatagccgcgggatcagctgacagatttgtg
tacatttgggacaccacatcacgccgcatcctctacaagctgccaggacacgccggctcg
gtcaacgaggtggtctttcatcccgaggagcccgtcgtgctctctggtggcagtgataaa
cggctgtacatgggagagattcagtag

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