Hippocampus comes (tiger tail seahorse): 109518803
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Entry
109518803 CDS
T04969
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
hcq
Hippocampus comes (tiger tail seahorse)
Pathway
hcq03018
RNA degradation
hcq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hcq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
109518803 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
109518803 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hcq03019
]
109518803 (lsm5)
03041 Spliceosome [BR:
hcq03041
]
109518803 (lsm5)
Messenger RNA biogenesis [BR:
hcq03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109518803 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
109518803 (lsm5)
Spliceosome [BR:
hcq03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
109518803 (lsm5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
109518803
NCBI-ProteinID:
XP_019730450
LinkDB
All DBs
Position
Unknown
AA seq
96 aa
AA seq
DB search
MLSSNMAANQATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVT
EFELTPEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgctttcatcaaacatggcggcaaatcaagcgacgaatccttctcagttgctcccgttg
gagcttgtggacaagtgcatcggttctcgcatccacattgtcatgaagacggacaaagaa
attgtcggcactttgctgggcttcgatgactttgtcaacatggtcctcgaggatgtgact
gaatttgaactaacaccagagggtcgcaggatcaccaaactggaccagatcttgctcaat
ggcaacaacatcaccatgctcatcccaggcggagaaggcccggaagtttaa
DBGET
integrated database retrieval system
