Hippocampus comes (tiger tail seahorse): 109519629
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Entry
109519629 CDS
T04969
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
hcq
Hippocampus comes (tiger tail seahorse)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
109519629
NCBI-ProteinID:
XP_019731850
LinkDB
All DBs
Position
Unknown
AA seq
1717 aa
AA seq
DB search
MAAPVKPGWLYVPQNYPRMAAPVKSGCTSRKNHARRIISTNFTPLECNLEKDAVGLLIRA
VRACRQVVAFAPPVELINKAETWMVLIRSREPCQTMSQMEFRLGFRITLVLVILAVTLSG
QRVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQWVANLVESFDVAPDKTRVAVVRY
SDRPTTEFHLGRYRTLEEVKQAARNIRYLGGNTMTGDAISYTTNNIFLEQNGARPAARGI
QKVAILLTDGRSQDYVLEPSSAAAQAGIRMFAVGIGEALKVELEEIAAEPKNAHVFHVTD
FNAIDKIRGRLRRRLCENVLCPNMKVHPDRFKQESTSYGLQQVPGFDLMDYFSVRDILGT
RLDEGQSAYVRLGTMPIVQQTEDVFPQGLPDEYAFVTTFKFRKTSRREDWYLWQIFDKYG
IPQVSIRLDGENKAVEYNAVGLTKDAVRAVFRNSEVDNLFDRNWHKIALSVEAKTVSLYL
DCKHIQTLPIGDREDIDIQGKTVIGKRLYDSVPIDFDLQRMVIYCDSKHAELETCCDLPN
GPCPKKVVTEAPPIAIPTPTPTTVEQQRGPQANCSCPAGDKGEAGAPGRAGLKGEKGETG
LRGATGFSGLKGEKGESGNVISGRGEKGDRGNIGLTGAPGQRGEKGASGFPGIDGLSGEK
GEKGEAGRTGNPGLPGLIGEKGVQGDAGYPGTPGLKGVTGDEGKKGEKGSTGASGERGFD
GLPGKPGIRGKDGLRGEAGLPGASGGKGDKGERGIPGLPGDVYQKDGLRGEKGELGLPGL
PGADGPPGPPGPPGPQGIPGEPGEFGQRGKKGESGLPGVDGLPGPIGPQGPPGPRGNNGN
TGPPGLPGEIGFSGKPGEAGKPGAPGKDGLDGLPGNDGAMGPRGERGADGFPGKAGPKGD
DGPPGPRGPPGERGLAGAPGVAGADGARGERGSPGDRGQDGPLGPKGEKGDKGEVGARGL
PGIPGNVASVIPEPGEPGKPGEKGEKGDQGQTGEMGPRGLPGEQGFKGPPGLPGAKGDTG
PQGEAGRVGDPGPPGVAGPQGPRGLPGNLGLPGIAGPPGPAGERGEKGESGKPGQAGQRG
QPGEPGLIGPPGPAGKGKDGLTGEPGPRGNEGPPGPKGPPGSRGEPGLPGDRGSPGEGKT
GPQGPPGNNGNPGPPGLRGLPGIPGPDGPAGHNGLPGRPGEKGSPGEPGKAADLSDIKLK
DICSDCPAGPPGPAGVPGLPGDKGQQGPPGKDGQDGYQGAPGLPGPQGPPGADGGKGLKG
DRGTSGMPGDKGEKGHPGPPGHPGPAGMIGAAGNDGQPGPPGPQGPPGEKGKEGLKGIQG
PPGLPGMIGPPGKIGKDGIQGEQGEPGKQGERGPLGNPGLRGLPGFKGHRGEHGSTGSKG
EDGKPGLPGRDGKPGKEGPKGPHGPEGPIGPRGEPGKQGEPGPSGKAGLPGTPGMRGERG
EPGNPGLPGFSGPKGPPGPPGPAGPEGKQGVPGRAGDRGLKGEKGDSGMKGDKGQSGEPG
IPGNTGPPGRKGHTGMMGMSGPPGEVGSPGPQGPSGNPGMPGPRGESASLEQMRRLIQEE
LAKQLDAKLAYLMAQMQPAHVKSSTGRPGPPGPPGKEGLPGRPGPPGEPGIPGINGGEGL
RGPMGPKGEKGTKGDKGDSGIGERGEQGPPGAIGPTGMPGYGKDGSPGQAGAQGEPGNPG
PHGQPGPPGPSGQCDPSQCAYYASLANRPHTKNVKGT
NT seq
5154 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcccgtgaaaccaggctggctgtacgttccgcaaaattatcccaggatggca
gcgcccgtgaaatcaggctgtacatcccgcaaaaaccatgccagaaggattatttcaaca
aattttacgccacttgagtgcaatttggagaaagatgctgtggggctgctgatacgggcg
gtaagggcctgcaggcaagtggtcgccttcgcgcctccagtggagctgattaacaaggca
gagacttggatggtgctaataagatcaagagaaccgtgtcaaaccatgtctcagatggaa
ttccgactgggctttaggatcacgctggtcttggtcatcctggctgtgactctttctggg
cagagagtggaagcgcagcgggcagggtgcaaaaatgtccactatgacctggcgttcatc
ctggatacctcgtccagtgtgggcaaggagaattttgagaagatcaggcaatgggtggcc
aacctggtggagtcttttgacgtagccccagacaagacccgagtggccgtcgttcgttac
agtgaccgccccaccaccgagttccacctggggagatacaggaccctggaggaggtgaag
caagccgccaggaacatacgctacctgggggggaatacaatgactggggatgctatcagc
tacaccaccaacaacatctttttggaacaaaacggagcgaggcccgcggccaggggaatc
cagaaggtggccatcctgctcacggacggccgaagtcaggattacgtcctggagccctcc
agtgcggccgcccaggcaggcatcaggatgtttgcggtgggcatcggtgaggccctgaaa
gtggagctggaggagattgcggcagagccaaagaacgctcacgtcttccacgtgactgac
ttcaacgccattgataagatcaggggccgactcaggaggaggctgtgcgaaaatgtatta
tgcccaaacatgaaggtacaccctgatcgctttaaacaggaaagcaccagttatggcctt
cagcaagttccaggctttgacctgatggactacttcagcgttcgagatattctgggcacc
agacttgatgagggtcagagtgcgtacgttcggcttggcaccatgccgattgtgcagcag
acagaggacgtgttccctcaggggctgccggatgagtacgcctttgtaacaacgttcaaa
ttccggaaaacctcaagacgagaagattggtacctctggcaaatctttgacaaatatgga
atcccgcaggtgtctatcaggctggacggtgagaacaaggcggtggagtacaacgccgta
gggttaaccaaagacgccgtccgagctgttttcaggaactccgaagtggacaacctcttt
gaccgcaactggcacaaaatagccctgagcgtggaggccaagaccgtgtctctctacctg
gactgtaaacacattcagacactgcccattggcgacagggaggacatcgatatccaagga
aagacggtcattgggaagaggttgtatgacagcgtgccaattgattttgacctccagagg
atggttatttactgcgactccaaacatgccgagctggaaacctgctgcgatttacccaat
gggccttgccctaagaaggttgtgactgaggctcctcctatcgcgatccccactccgacg
cccactacagttgagcagcagaggggcccccaagccaactgctcatgccctgctggagac
aagggagaggctggtgcacctggccgtgcaggtctcaagggtgaaaagggtgaaaccggc
cttcgaggtgccactggtttttcgggcctcaaaggagaaaagggagaaagtggcaacgtc
atctctggtagaggtgagaagggtgatagaggcaacatagggctgacaggtgctcctgga
caaagaggagagaagggagccagcggttttcccggtatcgatggtctatctggagaaaaa
ggcgaaaaaggagaggctgggcggactggcaatccaggacttcctggtctgattggagaa
aagggcgttcaaggtgatgcaggctatccaggaacaccaggactaaaaggtgtcactggt
gacgaggggaaaaaaggtgaaaagggatcaacaggagccagcggtgagcgcggcttcgat
ggattacctggaaaacccggcattcgcggcaaagatggcttgaggggagaggctggcttg
cccggagccagtgggggaaaaggtgataagggagagcgaggaatccccggattacctggt
gatgtgtaccaaaaagacggtctacggggagaaaagggagaacttgggctcccagggctt
ccgggggctgacggcccacccggaccacctggtcccccaggaccacaggggataccaggg
gaacctggggagtttggacaaaggggaaagaaaggtgaaagtggattgcctggagtggat
ggactccccggaccaatcggtccgcagggtccaccaggaccacgggggaacaatggcaac
actggacctcctggtctgccaggtgaaattggattttccggcaaacctggcgaggctgga
aagcctggtgctcctggtaaagatggcctggatggtcttcctgggaatgatggtgctatg
gggcccagaggagagcgcggagcagatggctttcctggcaaagccggaccaaagggagat
gatgggcctcctggaccaagaggacctccgggggagagaggattggctggcgcacctggt
gtagctggtgctgatggagcaagaggagagaggggaagtcctggtgacaggggtcaggat
ggaccactgggtccaaaaggtgaaaagggtgacaagggtgaagtaggagccaggggactg
cccggcatacccggaaatgtagcaagtgtcattcctgagccgggtgaacctggaaagcca
ggagaaaaaggagagaaaggggaccaaggacagactggagaaatgggcccgagaggatta
cctggtgagcaaggctttaagggtccacctggactaccgggtgcaaaaggggacacggga
cctcaaggagaggcaggacgtgttggggacccagggcctcctggtgtagctggtcctcaa
ggccctcgcgggctaccgggcaacttgggtttaccaggtatcgctgggcctcctggtcct
gctggagagagaggagaaaagggtgagtcaggcaaaccagggcaggcaggtcaacgagga
caacccggggagcctggtttgatcggaccgccaggaccagcagggaagggaaaagatgga
cttactggagaaccaggaccacggggaaatgaaggacccccagggccaaagggcccccca
gggtcaagaggagagccagggttaccaggggacagaggctccccaggggaaggcaaaaca
ggacctcaggggccccctggaaataatggcaatcctggaccacctggcttgaggggccta
cctggcatccctggtcccgatgggcccgcgggacataacggcctaccgggaaggcctgga
gagaagggatcacctggagagcctggaaaagcagcagacctttctgacatcaaacttaag
gacatctgctcagactgcccagcaggtccccctggaccagccggtgtcccaggactgccg
ggcgataaaggacaacagggacctcctgggaaagatggtcaagatggctatcaaggcgca
ccgggactaccgggacctcaaggacctcctggagctgatggaggaaagggacttaaaggt
gatcgaggtacttctggaatgccaggagataaaggagaaaagggtcaccctggacctcca
ggccaccctggtccagctggaatgatcggcgcagcgggtaatgatggacaacctggtcca
cctggtccccaaggaccccctggagagaagggcaaagagggtctcaaaggcatccagggt
ccaccgggtcttcctggcatgatcggtccacctggaaaaataggaaaggacggtatacaa
ggtgaacaaggagaaccaggcaaacaaggtgaacgtggaccacttggaaaccctgggctc
cgtggactcccaggcttcaagggccacagaggagaacatggttctactgggtcaaaggga
gaagatggaaagcctggattacctggacgggacggcaaacctggaaaagagggtccaaag
gggcctcatggaccagaaggacccattggaccaagaggcgagccgggcaagcagggtgaa
ccagggccgtcaggcaaagcaggtctcccaggaactccaggtatgagaggggaaagggga
gagcccggcaatccaggattacctggcttcagtggacccaaaggtcctccgggtccgcct
ggtcctgctggtccagaagggaaacagggagtcccaggccgagcaggtgatcgtggcctt
aagggggaaaaaggtgactcgggcatgaaaggagataaaggacaatcaggagaaccaggt
ataccaggaaacacaggaccacctggcagaaagggccacactgggatgatgggcatgtca
ggaccacccggtgaagtgggatctcctggccctcaaggaccttctgggaaccctggaatg
ccaggcccaagaggggagtccgcatcactggagcagatgagaaggctcattcaagaggaa
ttggccaagcaattggatgctaaattggcctaccttatggctcagatgcaaccagcccac
gtgaagagttcgacggggcgcccgggaccacccggtcctccgggtaaagagggcctccct
ggacgacctggcccacccggtgaaccgggcatacccggaataaatggtggagaaggactg
aggggacccatgggtccaaaaggtgaaaagggtactaaaggagacaagggagattctggg
attggtgaaagaggagagcaaggcccccctggtgcaataggtccaactggtatgcctggt
tatggtaaagacggaagcccaggacaagctggagcccaaggggagccaggtaaccctggc
ccccacggtcaacccggccctccaggaccttctggccaatgtgacccttcccagtgtgcc
tactacgccagccttgcgaacagacctcacacgaaaaatgtcaaggggacttaa
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integrated database retrieval system
